Variant report

Variant	rs16883225
Chromosome Location	chr8:34783301-34783302
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10086581	0.90[EUR][1000 genomes]
rs10087159	0.90[EUR][1000 genomes]
rs10090951	0.90[EUR][1000 genomes]
rs10092592	0.90[EUR][1000 genomes]
rs10096301	0.90[EUR][1000 genomes]
rs10096449	0.82[EUR][1000 genomes]
rs10101460	0.90[EUR][1000 genomes]
rs10102567	0.90[EUR][1000 genomes]
rs10107819	0.90[EUR][1000 genomes]
rs10111345	0.90[EUR][1000 genomes]
rs11985581	0.90[EUR][1000 genomes]
rs11990228	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16883229	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17249093	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28370409	0.90[EUR][1000 genomes]
rs28432762	0.90[EUR][1000 genomes]
rs28485573	0.90[EUR][1000 genomes]
rs28496972	0.90[EUR][1000 genomes]
rs28503874	0.90[EUR][1000 genomes]
rs28525412	0.90[EUR][1000 genomes]
rs28536669	0.90[EUR][1000 genomes]
rs28556575	0.90[EUR][1000 genomes]
rs28623761	0.90[EUR][1000 genomes]
rs28787088	0.90[EUR][1000 genomes]
rs28875276	0.90[EUR][1000 genomes]
rs56228324	0.90[EUR][1000 genomes]
rs57341113	0.90[EUR][1000 genomes]
rs57519708	0.90[EUR][1000 genomes]
rs58743779	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60290674	0.90[EUR][1000 genomes]
rs60838421	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61129621	0.93[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs61293092	0.90[EUR][1000 genomes]
rs61499746	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6468295	0.90[EUR][1000 genomes]
rs6989444	0.90[EUR][1000 genomes]
rs6990512	0.90[EUR][1000 genomes]
rs6995738	0.90[EUR][1000 genomes]
rs6999531	0.90[EUR][1000 genomes]
rs7003487	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7011097	0.90[EUR][1000 genomes]
rs7813448	0.90[EUR][1000 genomes]
rs7813623	0.90[EUR][1000 genomes]
rs7816316	0.90[EUR][1000 genomes]
rs7818107	0.90[EUR][1000 genomes]
rs7818290	0.90[EUR][1000 genomes]
rs7818422	0.90[EUR][1000 genomes]
rs7826595	0.90[EUR][1000 genomes]
rs7829892	0.90[EUR][1000 genomes]
rs7837025	0.90[EUR][1000 genomes]
rs7837932	0.90[EUR][1000 genomes]
rs7845212	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv972208	chr8:34644254-34790092	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv890716	chr8:34707436-34822797	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1017085	chr8:34742896-35594241	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv539546	chr8:34742896-35594241	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:34781200-34783600	Enhancers	Fetal Brain Female	brain
2	chr8:34781800-34783400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr8:34782400-34783400	Weak transcription	Fetal Brain Male	brain
4	chr8:34782600-34783400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr8:34782800-34783400	Enhancers	Placenta Amnion	Placenta Amnion
6	chr8:34782800-34783600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr8:34782800-34784000	Enhancers	HMEC	breast
8	chr8:34783000-34783400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr8:34783000-34783400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr8:34783000-34783400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr8:34783000-34783400	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr8:34783000-34783400	Enhancers	Muscle Satellite Cultured Cells	--
13	chr8:34783000-34783800	Enhancers	Hela-S3	cervix
14	chr8:34783000-34784000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr8:34783200-34783600	Enhancers	NH-A	brain

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