Variant report

Variant	rs16883958
Chromosome Location	chr4:30664951-30664952
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16884081	1.00[AMR][1000 genomes]
rs16884113	1.00[MKK][hapmap]
rs16884138	1.00[MKK][hapmap]
rs55904258	1.00[AMR][1000 genomes]
rs56350703	1.00[AMR][1000 genomes]
rs56988158	1.00[AMR][1000 genomes]
rs61192205	0.80[AFR][1000 genomes]
rs61473153	1.00[AMR][1000 genomes]
rs73115322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73115339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73117592	1.00[AMR][1000 genomes]
rs73121557	1.00[AMR][1000 genomes]
rs73121564	1.00[AMR][1000 genomes]
rs73121569	1.00[AMR][1000 genomes]
rs73121583	1.00[AMR][1000 genomes]
rs73812608	1.00[AMR][1000 genomes]
rs73812622	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878809	chr4:30652196-30676425	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30663000-30665400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:30664200-30665000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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