Variant report

Variant	rs16884447
Chromosome Location	chr4:31148302-31148303
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1392057	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16884369	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs16884379	0.89[LWK][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs16884392	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16884499	0.96[AFR][1000 genomes]
rs73218844	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1007884	chr4:31071934-31680623	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1007145	chr4:31079681-31670541	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv491749	chr4:31103307-31645668	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:31142000-31149600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:31142600-31150000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:31143000-31150400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr4:31143000-31151800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr4:31145600-31154400	Weak transcription	Fetal Heart	heart
6	chr4:31146600-31150400	Weak transcription	Fetal Lung	lung
7	chr4:31147000-31148600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr4:31147000-31150400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr4:31147400-31148800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr4:31147600-31148600	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr4:31147800-31148600	Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr4:31147800-31150600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr4:31148000-31148800	Active TSS	A549	lung
14	chr4:31148200-31148400	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr4:31148200-31148400	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr4:31148200-31148600	Active TSS	Duodenum Mucosa	Duodenum
17	chr4:31148200-31148600	Enhancers	Stomach Mucosa	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links