Variant report

Variant	rs16884650
Chromosome Location	chr6:36059684-36059685
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35991723..36001946-chr6:36059635..36067870,13	K562	blood:
2	chr6:36058000..36060417-chr6:36163279..36165711,2	K562	blood:
3	chr6:35993657..35995769-chr6:36058645..36060235,2	K562	blood:
4	chr6:36057741..36060174-chr6:36061007..36064556,3	MCF-7	breast:
5	chr6:36043088..36045724-chr6:36059289..36061896,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112062	Chromatin interaction
ENSG00000096070	Chromatin interaction
ENSG00000246982	Chromatin interaction
ENSG00000112053	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17655247	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36022000-36088800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:36039800-36062000	Weak transcription	Stomach Mucosa	stomach
3	chr6:36043200-36062400	Weak transcription	Small Intestine	intestine
4	chr6:36051400-36062200	Weak transcription	K562	blood
5	chr6:36051400-36062400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr6:36051400-36062400	Weak transcription	Fetal Kidney	kidney
7	chr6:36051400-36063400	Weak transcription	HUVEC	blood vessel
8	chr6:36051600-36060400	Weak transcription	HSMM	muscle
9	chr6:36051600-36062600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr6:36051600-36062600	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr6:36051600-36067600	Weak transcription	Brain Substantia Nigra	brain
12	chr6:36051600-36088800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:36051800-36062400	Weak transcription	Colonic Mucosa	Colon
14	chr6:36051800-36062600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr6:36051800-36070600	Weak transcription	Pancreas	Pancrea
16	chr6:36051800-36070600	Weak transcription	Psoas Muscle	Psoas
17	chr6:36051800-36070800	Weak transcription	Aorta	Aorta
18	chr6:36051800-36075800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr6:36052000-36059800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr6:36052000-36059800	Weak transcription	Fetal Brain Female	brain
21	chr6:36052000-36062200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr6:36052000-36062600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr6:36052000-36062600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr6:36052000-36062600	Weak transcription	Rectal Smooth Muscle	rectum
25	chr6:36052000-36063800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr6:36052000-36070600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:36052000-36070600	Weak transcription	Brain Angular Gyrus	brain
28	chr6:36052000-36070600	Weak transcription	NHLF	lung
29	chr6:36052000-36070800	Weak transcription	Esophagus	oesophagus
30	chr6:36052000-36075200	Weak transcription	Right Ventricle	heart
31	chr6:36052200-36059800	Weak transcription	Left Ventricle	heart
32	chr6:36052200-36059800	Weak transcription	Ovary	ovary
33	chr6:36052200-36059800	Weak transcription	Hela-S3	cervix
34	chr6:36052200-36059800	Weak transcription	HMEC	breast
35	chr6:36052200-36062400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr6:36052200-36062600	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr6:36052200-36062600	Weak transcription	GM12878-XiMat	blood
38	chr6:36052200-36067400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr6:36052200-36070600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr6:36052200-36070800	Weak transcription	Gastric	stomach
41	chr6:36052200-36071400	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr6:36052400-36059800	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr6:36052400-36059800	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr6:36052400-36059800	Weak transcription	Stomach Smooth Muscle	stomach
45	chr6:36052400-36060200	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr6:36052400-36062400	Weak transcription	Brain Hippocampus Middle	brain
47	chr6:36052400-36062400	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr6:36052400-36063800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr6:36052600-36059800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr6:36052600-36059800	Weak transcription	Brain Anterior Caudate	brain

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