Variant report

Variant	rs16884657
Chromosome Location	chr8:114440872-114440873
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1055168	0.81[ASN][1000 genomes]
rs1513527	0.81[ASN][1000 genomes]
rs1533274	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16884600	0.90[ASN][1000 genomes]
rs16884604	0.90[ASN][1000 genomes]
rs16884651	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs16884662	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16884689	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs16892653	0.82[EUR][1000 genomes]
rs1993895	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2127057	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2279160	0.81[ASN][1000 genomes]
rs2942849	0.81[ASN][1000 genomes]
rs57433086	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61249889	0.90[ASN][1000 genomes]
rs719213	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72673263	0.81[EUR][1000 genomes]
rs7464662	0.86[ASN][1000 genomes]
rs922467	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817379	chr8:114338391-115011632	Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2754463	chr8:114353649-114501547	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2761461	chr8:114420164-114462173	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv831429	chr8:114438561-114595565	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv3347240	chr8:114439876-114443074	Enhancers Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3370595	chr8:114440426-114442824	Enhancers Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:114436200-114442200	Weak transcription	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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