Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:75459206..75461737-chr6:75912359..75915403,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111799	Chromatin interaction

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11961124	0.87[AMR][1000 genomes]
rs11964370	0.87[AMR][1000 genomes]
rs11964395	0.87[AMR][1000 genomes]
rs16885567	0.96[ASN][1000 genomes]
rs2248046	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs2248047	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs34486215	0.96[ASN][1000 genomes]
rs59845477	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60670041	0.91[AMR][1000 genomes]
rs61169167	0.91[AMR][1000 genomes]
rs73449922	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917283	chr6:75234428-75641440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv830695	chr6:75409656-75583115	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv603759	chr6:75432861-75461657	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv886169	chr6:75432861-75610722	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75458400-75460800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:75458600-75460600	Enhancers	HMEC	breast
3	chr6:75458600-75460800	Enhancers	Colon Smooth Muscle	Colon
4	chr6:75459000-75459800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr6:75459000-75459800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr6:75459000-75459800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:75459000-75460000	Enhancers	HSMMtube	muscle
8	chr6:75459000-75460400	Enhancers	Osteobl	bone
9	chr6:75459000-75460600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:75459000-75460600	Enhancers	Muscle Satellite Cultured Cells	--
11	chr6:75459000-75461000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:75459200-75459800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:75459200-75460000	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr6:75459200-75460600	Enhancers	HUVEC	blood vessel
15	chr6:75459400-75464600	Weak transcription	Pancreas	Pancrea
16	chr6:75459600-75459800	Enhancers	NH-A	brain
17	chr6:75459600-75460000	Weak transcription	Gastric	stomach
18	chr6:75459600-75460200	Enhancers	Hela-S3	cervix
19	chr6:75459600-75460400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr6:75459600-75460600	Weak transcription	Rectal Smooth Muscle	rectum
21	chr6:75459600-75460600	Enhancers	NHEK	skin

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