Variant report

Variant	rs16886865
Chromosome Location	chr7:80542880-80542881
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:80542110..80544669-chr7:80882251..80884817,2	MCF-7	breast:
2	chr7:80539282..80541776-chr7:80542626..80545586,2	K562	blood:
3	chr7:80541697..80545590-chr7:80928288..80931909,4	MCF-7	breast:
4	chr7:80541903..80543664-chr7:80917466..80919079,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11977933	1.00[ASN][1000 genomes]
rs12666421	1.00[ASN][1000 genomes]
rs12670659	1.00[ASN][1000 genomes]
rs12671203	1.00[ASN][1000 genomes]
rs12673546	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv1028776	chr7:80414636-80555284	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80515000-80546400	Weak transcription	Left Ventricle	heart
2	chr7:80517800-80544600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:80520800-80546000	Weak transcription	Ovary	ovary
4	chr7:80525000-80546000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr7:80525600-80547600	Weak transcription	Gastric	stomach
6	chr7:80526200-80546600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr7:80526400-80547800	Weak transcription	Lung	lung
8	chr7:80527000-80546000	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr7:80530000-80547400	Weak transcription	Brain Angular Gyrus	brain
10	chr7:80530400-80546400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr7:80530600-80546400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr7:80532400-80544600	Weak transcription	Fetal Intestine Large	intestine
13	chr7:80532400-80545400	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr7:80532600-80544600	Weak transcription	Fetal Intestine Small	intestine
15	chr7:80533000-80544600	Weak transcription	Fetal Stomach	stomach
16	chr7:80534200-80544000	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr7:80534200-80546400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr7:80535000-80544600	Weak transcription	Fetal Muscle Trunk	muscle
19	chr7:80535200-80543000	Weak transcription	NHLF	lung
20	chr7:80535200-80546400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr7:80535200-80546400	Weak transcription	Brain Substantia Nigra	brain
22	chr7:80535400-80543200	Weak transcription	Adipose Nuclei	Adipose
23	chr7:80535400-80545400	Weak transcription	HSMMtube	muscle
24	chr7:80535400-80546600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr7:80535800-80545600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr7:80537000-80543200	Weak transcription	Stomach Smooth Muscle	stomach
27	chr7:80537200-80543000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr7:80537200-80544000	Weak transcription	Rectal Smooth Muscle	rectum
29	chr7:80538000-80546000	Weak transcription	Fetal Lung	lung
30	chr7:80538000-80546400	Weak transcription	Psoas Muscle	Psoas
31	chr7:80538200-80546000	Weak transcription	Brain Hippocampus Middle	brain
32	chr7:80538600-80545600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr7:80538800-80544400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr7:80538800-80545400	Strong transcription	Muscle Satellite Cultured Cells	--
35	chr7:80538800-80546000	Strong transcription	HSMM	muscle
36	chr7:80539400-80543000	Strong transcription	NHDF-Ad	bronchial
37	chr7:80539600-80545200	Genic enhancers	HMEC	breast
38	chr7:80539600-80546000	Strong transcription	NH-A	brain
39	chr7:80539800-80546000	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr7:80540000-80546000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr7:80540400-80546000	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr7:80540600-80543800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr7:80541000-80544400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr7:80541400-80546600	Weak transcription	Fetal Kidney	kidney
45	chr7:80541600-80545000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr7:80541800-80543000	Enhancers	Fetal Brain Female	brain
47	chr7:80542000-80543600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr7:80542200-80543000	Active TSS	Breast Myoepithelial Primary Cells	Breast
49	chr7:80542200-80543000	Weak transcription	Fetal Brain Male	brain
50	chr7:80542200-80543000	Strong transcription	NHEK	skin

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