Variant report

Variant	rs16887958
Chromosome Location	chr5:57520451-57520452
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16887956	1.00[AFR][1000 genomes]
rs73091733	0.80[AFR][1000 genomes]
rs73091743	0.85[AFR][1000 genomes]
rs73091769	0.90[AFR][1000 genomes]
rs73091771	0.90[AFR][1000 genomes]
rs73091782	0.90[AFR][1000 genomes]
rs73093469	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432746	chr5:57502859-57547419	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57520000-57520800	Enhancers	NHEK	skin
2	chr5:57520000-57521200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr5:57520200-57520600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:57520400-57520800	Active TSS	Right Atrium	heart
5	chr5:57520400-57521000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr5:57520400-57521200	Enhancers	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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