Variant report

Variant	rs16888472
Chromosome Location	chr8:39839386-39839387
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2909325	1.00[ASN][1000 genomes]
rs2909327	1.00[ASN][1000 genomes]
rs2909329	1.00[ASN][1000 genomes]
rs2955876	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2955880	1.00[ASN][1000 genomes]
rs2981143	1.00[ASN][1000 genomes]
rs55882919	1.00[ASN][1000 genomes]
rs72630566	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv539555	chr8:39683857-40673606	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1033371	chr8:39749437-39899540	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3412851	chr8:39821844-39840828	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39835200-39853600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:39836200-39847400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr8:39837000-39847200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr8:39837200-39841400	Enhancers	Liver	Liver
5	chr8:39837600-39847600	Weak transcription	Right Atrium	heart
6	chr8:39838400-39840000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr8:39839000-39839400	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr8:39839000-39839600	Enhancers	H1 Cell Line	embryonic stem cell
9	chr8:39839000-39839800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr8:39839200-39845200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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