Variant report

Variant	rs1688855
Chromosome Location	chr12:42444660-42444661
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1233994	0.81[AMR][1000 genomes]
rs1233996	0.81[AMR][1000 genomes]
rs12826710	0.84[AMR][1000 genomes]
rs1688874	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1732350	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1732351	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1732352	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1994284	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6582378	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7136038	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7305763	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs824699	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs824716	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs824717	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs824718	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs844046	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430505	chr12:42297931-42720773	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv832387	chr12:42345541-42465505	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42444400-42444800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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