Variant report

Variant	rs16889860
Chromosome Location	chr8:118553927-118553928
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:118549438..118551807-chr8:118552833..118555357,2	MCF-7	breast:
2	chr8:118553859..118555859-chr8:118575952..118578864,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10095891	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs10102741	0.87[ASN][1000 genomes]
rs16889828	1.00[JPT][hapmap];0.81[YRI][hapmap];0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs16889839	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs6987009	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7007678	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7014610	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7357462	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118534400-118557600	Weak transcription	Fetal Brain Male	brain
2	chr8:118542000-118558600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr8:118546600-118554000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr8:118546600-118554000	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr8:118546600-118554200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr8:118546600-118554400	Weak transcription	Left Ventricle	heart
7	chr8:118546600-118554600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr8:118546600-118554600	Weak transcription	Fetal Muscle Trunk	muscle
9	chr8:118546600-118554800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr8:118546600-118554800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr8:118546600-118554800	Weak transcription	Pancreas	Pancrea
12	chr8:118546600-118555000	Weak transcription	Fetal Thymus	thymus
13	chr8:118546600-118555000	Weak transcription	Thymus	Thymus
14	chr8:118546600-118555000	Weak transcription	NHLF	lung
15	chr8:118546600-118555200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr8:118546600-118555200	Weak transcription	Fetal Stomach	stomach
17	chr8:118546600-118555200	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr8:118546600-118555800	Weak transcription	Duodenum Mucosa	Duodenum
19	chr8:118546600-118555800	Weak transcription	Lung	lung
20	chr8:118546600-118556000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr8:118546600-118556000	Weak transcription	Colon Smooth Muscle	Colon
22	chr8:118546600-118557200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr8:118546600-118557600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr8:118546600-118557600	Weak transcription	Fetal Intestine Large	intestine
25	chr8:118546600-118558000	Weak transcription	Esophagus	oesophagus
26	chr8:118546600-118558000	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr8:118546600-118558200	Weak transcription	Fetal Intestine Small	intestine
28	chr8:118546600-118558200	Weak transcription	Spleen	Spleen
29	chr8:118546600-118558400	Weak transcription	Rectal Smooth Muscle	rectum
30	chr8:118546600-118558600	Weak transcription	Primary B cells from cord blood	blood
31	chr8:118546600-118559400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr8:118546600-118561600	Weak transcription	Osteobl	bone
33	chr8:118546800-118554200	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr8:118546800-118554400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr8:118546800-118554400	Weak transcription	HSMM	muscle
36	chr8:118546800-118554800	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr8:118546800-118557200	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr8:118546800-118558000	Weak transcription	Adipose Nuclei	Adipose
39	chr8:118546800-118561600	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr8:118546800-118562200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr8:118547000-118554800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr8:118547000-118554800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr8:118547000-118555000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr8:118547000-118555200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr8:118547000-118557000	Weak transcription	Fetal Muscle Leg	muscle
46	chr8:118547000-118557800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr8:118547200-118555400	Weak transcription	Primary B cells from peripheral blood	blood
48	chr8:118547400-118558400	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr8:118548000-118560400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
50	chr8:118548200-118556400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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