Variant report

Variant	rs16890168
Chromosome Location	chr6:37759676-37759677
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:50258702..50259774-chr6:37758614..37759901,5	K562	blood:
2	chr6:37759642..37762006-chr6:37820086..37822847,3	MCF-7	breast:
3	chr6:37758959..37759891-chr6:37827609..37828644,7	MCF-7	breast:
4	chr6:37758989..37760196-chr6:37827512..37828655,4	MCF-7	breast:
5	chr6:37759272..37760030-chr6:37786003..37786959,2	K562	blood:
6	chr6:37758926..37760720-chr6:37767100..37768812,2	K562	blood:
7	chr6:37759318..37759819-chr6:37786638..37787156,2	MCF-7	breast:
8	chr6:37758354..37761850-chr6:37786421..37788597,3	K562	blood:
9	chr6:37759261..37759896-chr6:37827736..37828259,2	K562	blood:
10	chr6:37757989..37761183-chr6:37784912..37786796,3	MCF-7	breast:
11	chr6:37758900..37760044-chr6:37980106..37981056,5	MCF-7	breast:
12	chr6:37756505..37762867-chr6:37772774..37778127,6	MCF-7	breast:
13	chr6:37709880..37710398-chr6:37758963..37759748,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000225945	Chromatin interaction
ENSG00000156639	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10498739	0.87[JPT][hapmap]
rs10498740	0.87[JPT][hapmap]
rs12660498	0.87[JPT][hapmap]
rs12662305	0.87[JPT][hapmap]
rs16890175	0.88[CHD][hapmap]
rs16890177	0.87[JPT][hapmap]
rs16890181	0.87[JPT][hapmap]
rs16890215	0.87[JPT][hapmap]
rs16890247	0.87[JPT][hapmap]
rs16890298	0.87[JPT][hapmap]
rs2064795	0.87[JPT][hapmap]
rs2274090	0.83[CHD][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap]
rs3852216	0.83[CHD][hapmap];0.87[JPT][hapmap]
rs6928307	0.82[GIH][hapmap]
rs6929224	0.81[CHD][hapmap]
rs752110	0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37758000-37759800	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr6:37758000-37759800	Enhancers	Liver	Liver
3	chr6:37758200-37759800	Enhancers	Pancreas	Pancrea
4	chr6:37758200-37760000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:37758400-37759800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:37758400-37759800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr6:37758400-37759800	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr6:37758400-37759800	Enhancers	Stomach Mucosa	stomach
9	chr6:37758600-37759800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:37758600-37759800	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr6:37758600-37759800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:37758600-37759800	Enhancers	Brain Cingulate Gyrus	brain
13	chr6:37758600-37759800	Enhancers	Brain Substantia Nigra	brain
14	chr6:37758600-37759800	Enhancers	Fetal Brain Female	brain
15	chr6:37758600-37759800	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr6:37758600-37759800	Enhancers	HMEC	breast
17	chr6:37758600-37759800	Enhancers	NHEK	skin
18	chr6:37758600-37760000	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr6:37758600-37760000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr6:37758600-37760000	Enhancers	NHLF	lung
21	chr6:37758600-37760000	Enhancers	Osteobl	bone
22	chr6:37758600-37760600	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr6:37758600-37761400	Enhancers	NHDF-Ad	bronchial
24	chr6:37758600-37762600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:37758800-37759800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr6:37758800-37759800	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr6:37758800-37759800	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr6:37758800-37759800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr6:37758800-37759800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr6:37758800-37759800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr6:37758800-37759800	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr6:37758800-37759800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr6:37758800-37759800	Enhancers	Primary monocytes fromperipheralblood	blood
34	chr6:37758800-37759800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr6:37758800-37759800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr6:37758800-37759800	Enhancers	Muscle Satellite Cultured Cells	--
37	chr6:37758800-37759800	Enhancers	Brain Anterior Caudate	brain
38	chr6:37758800-37759800	Enhancers	Brain Hippocampus Middle	brain
39	chr6:37758800-37759800	Enhancers	Duodenum Smooth Muscle	Duodenum
40	chr6:37758800-37759800	Enhancers	Fetal Intestine Small	intestine
41	chr6:37758800-37759800	Enhancers	Fetal Muscle Trunk	muscle
42	chr6:37758800-37759800	Enhancers	Fetal Muscle Leg	muscle
43	chr6:37758800-37759800	Enhancers	Psoas Muscle	Psoas
44	chr6:37758800-37759800	Enhancers	HSMM	muscle
45	chr6:37758800-37759800	Enhancers	NH-A	brain
46	chr6:37758800-37760000	Enhancers	Adipose Nuclei	Adipose
47	chr6:37758800-37760000	Enhancers	Placenta Amnion	Placenta Amnion
48	chr6:37758800-37760000	Enhancers	K562	blood
49	chr6:37758800-37761600	Enhancers	Placenta	Placenta
50	chr6:37759000-37759800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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