Variant report

Variant	rs16890277
Chromosome Location	chr6:37908607-37908608
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1187422	0.81[ASN][1000 genomes]
rs1187423	0.81[ASN][1000 genomes]
rs12198907	0.81[ASN][1000 genomes]
rs12200258	0.81[ASN][1000 genomes]
rs12206818	0.81[ASN][1000 genomes]
rs12211248	0.81[ASN][1000 genomes]
rs12211981	0.81[ASN][1000 genomes]
rs12213835	0.81[ASN][1000 genomes]
rs13210701	0.81[ASN][1000 genomes]
rs259673	0.81[ASN][1000 genomes]
rs259686	0.81[ASN][1000 genomes]
rs259689	0.81[ASN][1000 genomes]
rs259690	0.81[ASN][1000 genomes]
rs259691	0.81[ASN][1000 genomes]
rs259695	0.81[ASN][1000 genomes]
rs259713	0.81[ASN][1000 genomes]
rs259715	0.81[ASN][1000 genomes]
rs2645107	0.81[ASN][1000 genomes]
rs2842517	0.81[ASN][1000 genomes]
rs34871463	0.81[ASN][1000 genomes]
rs9647619	0.81[ASN][1000 genomes]
rs966705	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1017051	chr6:37789341-38084719	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv538203	chr6:37789341-38084719	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1018711	chr6:37813397-37981590	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1020625	chr6:37833591-38155622	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37873400-37929200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:37880200-37930000	Weak transcription	Thymus	Thymus
3	chr6:37884800-37917000	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr6:37887600-37933200	Weak transcription	NHDF-Ad	bronchial
5	chr6:37890800-37910400	Weak transcription	NHEK	skin
6	chr6:37892600-37910800	Weak transcription	Primary B cells from cord blood	blood
7	chr6:37892600-37928800	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr6:37893200-37910400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:37896800-37929000	Weak transcription	Esophagus	oesophagus
10	chr6:37897200-37908800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr6:37897200-37909000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:37897200-37909000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:37897200-37910600	Weak transcription	A549	lung
14	chr6:37898200-37913800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr6:37898600-37910400	Weak transcription	Fetal Kidney	kidney
16	chr6:37899200-37909000	Weak transcription	Fetal Intestine Large	intestine
17	chr6:37901000-37908800	Weak transcription	Colon Smooth Muscle	Colon
18	chr6:37901000-37915400	Weak transcription	Duodenum Mucosa	Duodenum
19	chr6:37901600-37909000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr6:37902200-37909200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:37902200-37910600	Weak transcription	NHLF	lung
22	chr6:37902200-37913600	Weak transcription	HepG2	liver
23	chr6:37903400-37911400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:37903600-37908800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr6:37904800-37920400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr6:37904800-37920400	Weak transcription	Small Intestine	intestine
27	chr6:37904800-37933400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr6:37905000-37910200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr6:37905000-37911000	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr6:37905000-37919600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr6:37905200-37909000	Weak transcription	GM12878-XiMat	blood
32	chr6:37905200-37909400	Enhancers	Primary hematopoietic stem cells	blood
33	chr6:37905200-37910400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr6:37905200-37910400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr6:37905200-37910800	Weak transcription	Primary B cells from peripheral blood	blood
36	chr6:37905200-37910800	Weak transcription	HMEC	breast
37	chr6:37905600-37909600	Enhancers	Fetal Heart	heart
38	chr6:37905800-37911400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr6:37905800-37916200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr6:37905800-37916600	Weak transcription	Dnd41	blood
41	chr6:37905800-37924000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr6:37906400-37909000	Weak transcription	Brain Hippocampus Middle	brain
43	chr6:37906600-37909000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr6:37906600-37909000	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr6:37906600-37909600	Enhancers	Stomach Smooth Muscle	stomach
46	chr6:37906800-37908800	Weak transcription	Primary T cells from cord blood	blood
47	chr6:37906800-37909200	Weak transcription	Right Ventricle	heart
48	chr6:37906800-37909400	Enhancers	Duodenum Smooth Muscle	Duodenum
49	chr6:37906800-37909800	Enhancers	Primary T helper cells PMA-I stimulated	--
50	chr6:37906800-37910600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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