Variant report

Variant	rs16890325
Chromosome Location	chr6:79541228-79541229
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16890324	1.00[AFR][1000 genomes]
rs16890326	0.94[AFR][1000 genomes]
rs16890328	0.94[AFR][1000 genomes]
rs16890331	0.94[AFR][1000 genomes]
rs16890347	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015352	chr6:79521820-79757024	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv1839807	chr6:79532610-79606615	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79539600-79542000	Enhancers	Duodenum Mucosa	Duodenum
2	chr6:79540200-79541400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr6:79540400-79542000	Enhancers	Fetal Intestine Large	intestine
4	chr6:79540600-79541600	Enhancers	Ovary	ovary
5	chr6:79540800-79541600	Enhancers	Sigmoid Colon	Sigmoid Colon
6	chr6:79541000-79541600	Enhancers	Pancreas	Pancrea
7	chr6:79541000-79542800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr6:79541200-79541400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:79541200-79542000	Enhancers	Brain Angular Gyrus	brain
10	chr6:79541200-79542000	Enhancers	Brain Cingulate Gyrus	brain
11	chr6:79541200-79542000	Enhancers	Brain Hippocampus Middle	brain
12	chr6:79541200-79542000	Enhancers	Right Atrium	heart
13	chr6:79541200-79542400	Enhancers	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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