Variant report

Variant	rs16890700
Chromosome Location	chr6:80123725-80123726
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1335535	1.00[MEX][hapmap]
rs16890667	1.00[ASN][1000 genomes]
rs16890678	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16890686	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16890697	1.00[ASN][1000 genomes]
rs16890701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16890704	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16890705	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4706756	1.00[MEX][hapmap]
rs57860569	1.00[ASN][1000 genomes]
rs57952857	1.00[ASN][1000 genomes]
rs59540401	1.00[ASN][1000 genomes]
rs9350803	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028607	chr6:79853272-80767716	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv886301	chr6:80111104-80339088	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv886302	chr6:80111104-80355973	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1030126	chr6:80113449-80209165	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv1027388	chr6:80113449-80355973	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80116200-80131600	Weak transcription	Fetal Intestine Small	intestine
2	chr6:80121400-80129800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:80121800-80124200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:80122600-80124000	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr6:80122800-80123800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:80122800-80124000	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr6:80122800-80124000	Enhancers	Fetal Lung	lung
8	chr6:80122800-80124200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:80122800-80124200	Enhancers	Hela-S3	cervix
10	chr6:80122800-80124600	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr6:80122800-80124600	Enhancers	Dnd41	blood
12	chr6:80122800-80124600	Enhancers	NHEK	skin
13	chr6:80122800-80125000	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr6:80123000-80124200	Enhancers	Muscle Satellite Cultured Cells	--
15	chr6:80123200-80123800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:80123200-80123800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:80123200-80124200	Weak transcription	Placenta	Placenta
18	chr6:80123400-80123800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr6:80123400-80123800	Active TSS	iPS-20b Cell Line	embryonic stem cell
20	chr6:80123400-80124600	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr6:80123600-80124800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr6:80123600-80131800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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