Variant report

Variant	rs16891232
Chromosome Location	chr6:160669701-160669702
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:34)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:34 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr6:160669604-160669981	Hela-S3	cervix:	n/a	n/a
2	STAT3	chr6:160669649-160669987	MCF10A-Er-Src	breast:	n/a	n/a
3	EP300	chr6:160669480-160670041	Hela-S3	cervix:	n/a	n/a
4	CEBPB	chr6:160669575-160670041	Hela-S3	cervix:	n/a	n/a
5	FOSL2	chr6:160669574-160669896	A549	lung:	n/a	n/a
6	TCF12	chr6:160669463-160670129	A549	lung:	n/a	n/a
7	RCOR1	chr6:160669591-160669989	Hela-S3	cervix:	n/a	n/a
8	CEBPB	chr6:160669563-160670070	A549	lung:	n/a	n/a
9	SMC3	chr6:160669639-160669951	Hela-S3	cervix:	n/a	n/a
10	E2F4	chr6:160669689-160669885	MCF10A-Er-Src	breast:	n/a	n/a
11	FOS	chr6:160669538-160669987	MCF10A-Er-Src	breast:	n/a	n/a
12	TBP	chr6:160669540-160669988	Hela-S3	cervix:	n/a	n/a
13	MXI1	chr6:160669630-160669955	Hela-S3	cervix:	n/a	n/a
14	TFAP2C	chr6:160669578-160669964	Hela-S3	cervix:	n/a	n/a
15	SP1	chr6:160669541-160670052	A549	lung:	n/a	n/a
16	JUND	chr6:160669566-160669989	Hela-S3	cervix:	n/a	n/a
17	GATA3	chr6:160669349-160670185	A549	lung:	n/a	n/a
18	RAD21	chr6:160669617-160670023	Hela-S3	cervix:	n/a	n/a
19	RFX5	chr6:160669599-160669952	Hela-S3	cervix:	n/a	n/a
20	STAT3	chr6:160669604-160670015	Hela-S3	cervix:	n/a	n/a
21	STAT3	chr6:160669538-160669965	MCF10A-Er-Src	breast:	n/a	n/a
22	SP1	chr6:160669522-160670039	A549	lung:	n/a	n/a
23	CHD2	chr6:160669630-160670020	Hela-S3	cervix:	n/a	n/a
24	BRCA1	chr6:160669462-160669918	Hela-S3	cervix:	n/a	n/a
25	MYC	chr6:160669684-160669936	MCF10A-Er-Src	breast:	n/a	n/a
26	CEBPB	chr6:160669642-160670021	A549	lung:	n/a	n/a
27	FOS	chr6:160669562-160669928	MCF10A-Er-Src	breast:	n/a	n/a
28	FOS	chr6:160669574-160669994	MCF10A-Er-Src	breast:	n/a	n/a
29	USF2	chr6:160669660-160669977	Hela-S3	cervix:	n/a	n/a
30	EP300	chr6:160669429-160670135	A549	lung:	n/a	n/a
31	FOSL2	chr6:160669466-160670024	A549	lung:	n/a	n/a
32	STAT3	chr6:160669623-160669750	MCF10A-Er-Src	breast:	n/a	n/a
33	STAT3	chr6:160669582-160669983	MCF10A-Er-Src	breast:	n/a	n/a
34	FOS	chr6:160669577-160669983	MCF10A-Er-Src	breast:	n/a	n/a

No data

Variant related genes	Relation type
SLC22A2	TF binding region

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16891263	1.00[CHB][hapmap]
rs16891272	0.88[CHB][hapmap]
rs2661836	0.88[CHB][hapmap]
rs2665353	0.88[CHB][hapmap]
rs374145	0.88[CHB][hapmap]
rs3912162	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs415634	1.00[JPT][hapmap]
rs437865	0.88[CHB][hapmap]
rs9346814	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9355797	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs9364550	1.00[JPT][hapmap]
rs9364551	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9365148	1.00[JPT][hapmap]
rs9365151	0.88[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758089	chr6:160372244-161234665	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	esv2759484	chr6:160372244-161234665	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv35098	chr6:160422589-161070870	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	esv2757197	chr6:160432331-161070870	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv818463	chr6:160435569-161025547	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv1030746	chr6:160592321-160867031	Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv538493	chr6:160592321-160867031	Weak transcription Bivalent/Poised TSS Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1030171	chr6:160648469-161091864	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:160662200-160671000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:160667800-160669800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr6:160667800-160669800	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr6:160667800-160670000	Enhancers	H9 Cell Line	embryonic stem cell
5	chr6:160667800-160674200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr6:160668000-160670000	Enhancers	H1 Cell Line	embryonic stem cell
7	chr6:160668000-160670400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr6:160668000-160671200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:160668000-160674600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr6:160668200-160670000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:160668400-160670000	Enhancers	Osteobl	bone
12	chr6:160668600-160670000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:160668600-160670200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:160668600-160671800	Enhancers	Hela-S3	cervix
15	chr6:160668800-160671600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr6:160669000-160670000	Enhancers	Colon Smooth Muscle	Colon
17	chr6:160669000-160670400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:160669000-160671200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr6:160669000-160671600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr6:160669200-160670200	Weak transcription	Placenta	Placenta
21	chr6:160669200-160670600	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr6:160669200-160670600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr6:160669200-160673600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr6:160669400-160670000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr6:160669400-160670000	Enhancers	Rectal Smooth Muscle	rectum
26	chr6:160669400-160670000	Enhancers	NHDF-Ad	bronchial
27	chr6:160669400-160670200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr6:160669400-160670200	Enhancers	HMEC	breast
29	chr6:160669400-160670400	Enhancers	A549	lung
30	chr6:160669400-160670400	Enhancers	NHEK	skin
31	chr6:160669400-160670600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr6:160669400-160670800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr6:160669400-160673200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr6:160669400-160674400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr6:160669600-160671400	Weak transcription	Fetal Kidney	kidney
36	chr6:160669600-160674400	Weak transcription	Fetal Intestine Small	intestine
37	chr6:160669600-160679000	Weak transcription	Placenta Amnion	Placenta Amnion

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