Variant report

Variant	rs16891425
Chromosome Location	chr6:38983578-38983579
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:38976194..38979423-chr6:38983493..38987225,3	K562	blood:
2	chr6:38975629..38979423-chr6:38983493..38987291,5	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10305428	1.00[AMR][1000 genomes]
rs10484848	0.89[CHB][hapmap];0.93[JPT][hapmap]
rs10484849	0.89[CHB][hapmap];0.93[JPT][hapmap]
rs10484851	0.89[CHB][hapmap];0.93[JPT][hapmap]
rs10947769	0.89[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs10947772	0.81[ASN][1000 genomes]
rs10947773	0.88[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs10947774	0.89[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs10947775	0.89[CHB][hapmap];0.93[JPT][hapmap]
rs12192920	0.89[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs12196393	0.89[CHB][hapmap];0.93[JPT][hapmap]
rs12199125	0.90[ASN][1000 genomes]
rs12202648	0.89[CHB][hapmap];0.93[JPT][hapmap]
rs12202878	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs12210777	0.89[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs12212950	0.89[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs1332016	0.89[CHB][hapmap];0.93[JPT][hapmap]
rs16891346	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs16891368	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs16891395	1.00[AMR][1000 genomes]
rs16891420	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16891428	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16891431	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16891435	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16891439	1.00[AMR][1000 genomes]
rs2076515	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs2281339	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2281341	0.98[ASN][1000 genomes]
rs2281343	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2281344	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56800988	0.89[ASN][1000 genomes]
rs58473344	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59339583	0.89[ASN][1000 genomes]
rs60464866	1.00[AMR][1000 genomes]
rs60831909	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1028088	chr6:38821047-39163549	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv538205	chr6:38821047-39163549	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv885821	chr6:38843970-39039503	Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv948357	chr6:38920998-39035836	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links