Variant report

Variant	rs16892190
Chromosome Location	chr8:120184135-120184136
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:120183937..120185450-chr8:120190160..120192136,2	MCF-7	breast:
2	chr8:120183437..120185122-chr8:120187205..120189919,2	MCF-7	breast:
3	chr8:120182916..120184889-chr8:120187238..120189541,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1064556	0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1064557	0.92[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs13260242	0.81[JPT][hapmap]
rs1601394	0.83[ASN][1000 genomes]
rs16891948	0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs16891954	0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs16891962	0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs16891984	0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs16892035	0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs16892053	0.92[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs16892077	0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs16892088	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16892132	0.84[AFR][1000 genomes]
rs3829047	1.00[JPT][hapmap]
rs4301474	0.80[JPT][hapmap]
rs56095688	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56940872	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs57031367	0.89[ASN][1000 genomes]
rs57099703	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57938217	0.96[ASN][1000 genomes]
rs58035790	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58945296	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59545571	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60191681	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60449953	0.94[ASN][1000 genomes]
rs60665520	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61390727	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6469809	0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6981320	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6984886	0.84[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6990729	0.95[ASN][1000 genomes]
rs7004816	0.95[ASN][1000 genomes]
rs73327248	0.95[ASN][1000 genomes]
rs73327249	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73327257	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73327262	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73327264	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73327271	0.95[ASN][1000 genomes]
rs73709632	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs73712719	0.94[ASN][1000 genomes]
rs7825193	0.84[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7828020	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868916	chr8:119911943-120762250	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv2758169	chr8:119943309-120275750	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	esv2759639	chr8:119943309-120275750	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv6363	chr8:120150231-120188957	Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv982083	chr8:120180351-120187700	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:120183400-120188800	Weak transcription	Duodenum Mucosa	Duodenum

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