Variant report

Variant	rs16892301
Chromosome Location	chr8:120292571-120292572
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10088771	0.88[AFR][1000 genomes]
rs10094143	1.00[AFR][1000 genomes]
rs10098695	0.83[AFR][1000 genomes]
rs16892269	1.00[AFR][1000 genomes]
rs16892302	1.00[AFR][1000 genomes]
rs16892310	1.00[AFR][1000 genomes]
rs28373723	1.00[AFR][1000 genomes]
rs28374309	1.00[AFR][1000 genomes]
rs28574990	1.00[ASW][hapmap];0.89[LWK][hapmap];0.84[MKK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs28753374	1.00[AFR][1000 genomes]
rs28816373	0.81[AFR][1000 genomes]
rs28830917	1.00[AFR][1000 genomes]
rs28845555	0.90[AFR][1000 genomes]
rs28858215	0.90[AFR][1000 genomes]
rs7000762	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868916	chr8:119911943-120762250	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1026655	chr8:120282929-120522329	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:120291200-120302800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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