Variant report

Variant	rs16892891
Chromosome Location	chr4:16053403-16053404
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:16051882..16054680-chr4:16233913..16235649,2	MCF-7	breast:
2	chr4:16053312..16056057-chr4:16224879..16227809,2	K562	blood:

Variant related genes	Relation type
ENSG00000169762	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16892885	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16892920	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56664915	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56981596	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58265184	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58682368	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59531672	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60197637	1.00[EUR][1000 genomes]
rs61327798	1.00[EUR][1000 genomes]
rs62288713	1.00[AFR][1000 genomes]
rs6817756	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv916742	chr4:15797994-16064232	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv998299	chr4:16031459-16226466	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:16025800-16057600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr4:16026400-16066600	Weak transcription	Colonic Mucosa	Colon
3	chr4:16026400-16066600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr4:16034400-16072200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:16036400-16057800	Weak transcription	Fetal Intestine Small	intestine
6	chr4:16039800-16062800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:16045600-16057600	Weak transcription	Fetal Brain Female	brain
8	chr4:16045800-16057600	Weak transcription	Right Atrium	heart
9	chr4:16045800-16067200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr4:16046200-16055800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr4:16046200-16057000	Weak transcription	Stomach Mucosa	stomach
12	chr4:16046200-16057600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr4:16046200-16057600	Weak transcription	Gastric	stomach
14	chr4:16046800-16069600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr4:16047000-16057600	Weak transcription	Pancreas	Pancrea
16	chr4:16049400-16059800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr4:16050800-16057600	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr4:16050800-16057800	Weak transcription	Fetal Muscle Trunk	muscle
19	chr4:16050800-16059400	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr4:16050800-16064600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr4:16050800-16065400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr4:16050800-16066800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr4:16051000-16056800	Weak transcription	Fetal Muscle Leg	muscle
24	chr4:16051000-16056800	Weak transcription	Fetal Stomach	stomach
25	chr4:16051000-16058600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr4:16051000-16059400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr4:16051200-16057000	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr4:16051200-16059200	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr4:16051200-16067200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr4:16051800-16055800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr4:16052400-16056600	Enhancers	Primary hematopoietic stem cells	blood
32	chr4:16052400-16056600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr4:16052400-16057800	Weak transcription	Aorta	Aorta
34	chr4:16052600-16054600	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr4:16053000-16054000	Enhancers	Brain Inferior Temporal Lobe	brain
36	chr4:16053000-16054200	Enhancers	Brain Hippocampus Middle	brain
37	chr4:16053000-16054200	Enhancers	Fetal Brain Male	brain
38	chr4:16053200-16053800	Enhancers	Brain Angular Gyrus	brain
39	chr4:16053200-16053800	Active TSS	Brain Anterior Caudate	brain
40	chr4:16053200-16054200	Enhancers	Brain Cingulate Gyrus	brain
41	chr4:16053400-16053800	Active TSS	Brain Substantia Nigra	brain
42	chr4:16053400-16054200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr4:16053400-16058400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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