Variant report

Variant	rs16895758
Chromosome Location	chr5:61137046-61137047
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10939920	0.92[ASN][1000 genomes]
rs10939921	0.85[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs11738232	0.90[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs11738714	0.88[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs11741095	0.92[ASN][1000 genomes]
rs11741160	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11741595	0.91[EUR][1000 genomes]
rs11742218	0.92[ASN][1000 genomes]
rs11742850	0.80[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11743027	0.93[ASN][1000 genomes]
rs11743349	0.87[EUR][1000 genomes]
rs11743431	0.91[EUR][1000 genomes]
rs11744750	0.93[ASN][1000 genomes]
rs11745304	0.90[ASN][1000 genomes]
rs11745691	0.92[ASN][1000 genomes]
rs11746703	0.92[ASN][1000 genomes]
rs11746773	0.87[EUR][1000 genomes]
rs13153954	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs13167413	0.82[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs13170522	0.92[ASN][1000 genomes]
rs1374004	0.92[ASN][1000 genomes]
rs1500214	0.90[ASN][1000 genomes]
rs16895507	0.85[EUR][1000 genomes]
rs34469886	0.92[ASN][1000 genomes]
rs35062333	0.92[ASN][1000 genomes]
rs35167789	0.92[ASN][1000 genomes]
rs36054653	0.92[ASN][1000 genomes]
rs4292411	0.92[ASN][1000 genomes]
rs4461596	0.92[ASN][1000 genomes]
rs6864987	0.90[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs6865401	0.92[ASN][1000 genomes]
rs6872170	0.90[ASN][1000 genomes]
rs6872348	0.90[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs71631913	0.92[ASN][1000 genomes]
rs71631914	0.92[ASN][1000 genomes]
rs7710360	0.90[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs975134	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020693	chr5:61098865-61357032	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:61130200-61162000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:61135600-61139000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:61136800-61138400	Weak transcription	Pancreas	Pancrea

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