Variant report

Variant	rs16896125
Chromosome Location	chr6:164527346-164527347
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:164377373..164378320-chr6:164527287..164527824,2	MCF-7	breast:
2	chr6:164526375..164528234-chr6:164529949..164531594,2	K562	blood:
3	chr6:164527209..164529090-chr6:164549117..164551692,2	K562	blood:

Variant related genes	Relation type
ENSG00000230627	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16896122	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16896134	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16896136	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16896159	0.89[YRI][hapmap]
rs56340143	1.00[AMR][1000 genomes]
rs56765278	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58129218	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59125888	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6938054	1.00[AMR][1000 genomes]
rs73787548	1.00[AMR][1000 genomes]
rs7759279	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1029952	chr6:164463355-165268911	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164506400-164530200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:164519000-164528400	Weak transcription	Psoas Muscle	Psoas
3	chr6:164520200-164528600	Weak transcription	Esophagus	oesophagus
4	chr6:164520400-164529200	Weak transcription	Adipose Nuclei	Adipose
5	chr6:164523200-164529400	Weak transcription	Right Atrium	heart
6	chr6:164523200-164530600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:164523400-164536400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:164523800-164527400	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr6:164524000-164527800	Weak transcription	Brain Hippocampus Middle	brain
10	chr6:164524000-164529200	Weak transcription	Brain Substantia Nigra	brain
11	chr6:164524800-164531800	Enhancers	Fetal Muscle Leg	muscle
12	chr6:164525000-164527400	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr6:164526000-164528800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr6:164526200-164527400	Active TSS	Right Ventricle	heart
15	chr6:164526400-164527600	Active TSS	Left Ventricle	heart
16	chr6:164526600-164527800	Active TSS	K562	blood
17	chr6:164526800-164527600	Active TSS	Brain Anterior Caudate	brain
18	chr6:164527200-164527800	Flanking Active TSS	Brain Cingulate Gyrus	brain
19	chr6:164527200-164530400	Enhancers	Fetal Muscle Trunk	muscle
20	chr6:164527200-164531600	Enhancers	Fetal Heart	heart

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