Variant report

Variant	rs16896262
Chromosome Location	chr8:122870661-122870662
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16896147	0.85[AFR][1000 genomes]
rs16896211	0.88[AFR][1000 genomes]
rs16896265	1.00[AFR][1000 genomes]
rs16896319	1.00[AFR][1000 genomes]
rs16896339	1.00[AFR][1000 genomes]
rs60768551	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752207	chr8:122869651-122961848	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122869400-122873600	Enhancers	Fetal Lung	lung
2	chr8:122869600-122871600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr8:122870000-122870800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:122870200-122871200	Enhancers	Fetal Stomach	stomach
5	chr8:122870400-122871200	Enhancers	Liver	Liver
6	chr8:122870400-122871400	Enhancers	Fetal Kidney	kidney
7	chr8:122870600-122871000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr8:122870600-122881800	Weak transcription	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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