Variant report

Variant	rs16896473
Chromosome Location	chr5:61174588-61174589
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1445876	1.00[AFR][1000 genomes]
rs16896311	1.00[AFR][1000 genomes]
rs16896432	1.00[AFR][1000 genomes]
rs16896477	1.00[AFR][1000 genomes]
rs17343961	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020693	chr5:61098865-61357032	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv965604	chr5:61171281-61182073	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:61173600-61175000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr5:61173600-61175000	Enhancers	HMEC	breast
3	chr5:61173800-61174800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr5:61173800-61175200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr5:61174000-61174800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:61174000-61174800	Enhancers	NHEK	skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links