Variant report

Variant	rs16896889
Chromosome Location	chr8:99344480-99344481
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:99338568..99340771-chr8:99343005..99345030,3	MCF-7	breast:
2	chr8:99321286..99323579-chr8:99343349..99347132,3	MCF-7	breast:
3	chr8:99344129..99347953-chr8:99347984..99350606,4	K562	blood:
4	chr8:99343429..99346182-chr8:99476403..99480248,3	MCF-7	breast:
5	chr8:99302112..99311881-chr8:99336694..99356691,43	MCF-7	breast:
6	chr8:99304023..99311791-chr8:99340525..99354206,27	MCF-7	breast:
7	chr8:99344297..99345235-chr8:99357703..99358227,2	MCF-7	breast:
8	chr8:99312344..99314652-chr8:99343314..99345193,2	MCF-7	breast:
9	chr8:99339898..99346485-chr8:99480859..99484990,7	MCF-7	breast:
10	chr8:99177022..99179893-chr8:99342970..99346004,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000104361	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10955163	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10955164	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11990127	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12375289	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12541410	0.90[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12542247	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12545666	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12546215	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12547347	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13259687	0.85[YRI][hapmap]
rs13278348	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16892233	0.82[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34468294	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35717300	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35841793	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4346964	0.82[YRI][hapmap]
rs4463387	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4543515	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4734398	0.83[YRI][hapmap]
rs6996904	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6997055	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7002877	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71514986	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs71514987	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73285674	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7820378	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7837340	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9642950	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032904	chr8:98756076-99476925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv539687	chr8:98756076-99476925	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv831406	chr8:99290745-99482076	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99339200-99348000	Weak transcription	HSMMtube	muscle
2	chr8:99341000-99348200	Weak transcription	HSMM	muscle
3	chr8:99341600-99344600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr8:99341600-99344600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr8:99341800-99349200	Weak transcription	NHLF	lung
6	chr8:99342000-99344600	Weak transcription	Adipose Nuclei	Adipose
7	chr8:99342400-99344600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr8:99342400-99344800	Weak transcription	Ovary	ovary
9	chr8:99343600-99344800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr8:99344400-99344600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr8:99344400-99344600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
12	chr8:99344400-99344600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr8:99344400-99345200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr8:99344400-99347600	Enhancers	Osteobl	bone
15	chr8:99344400-99354200	Enhancers	NHDF-Ad	bronchial

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