Variant report

Variant	rs16898016
Chromosome Location	chr6:165994636-165994637
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:165992878..165995298-chr6:165997278..165998902,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11757576	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11759674	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs56177988	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3417270	chr6:165682773-166023032	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv886928	chr6:165722345-166197889	Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1016999	chr6:165979351-166480502	Enhancers Strong transcription Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv538534	chr6:165979351-166480502	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165982600-165995000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:165987600-165995000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr6:165988000-165998800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:165988800-165994800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:165988800-165997400	Weak transcription	Pancreas	Pancrea
6	chr6:165988800-165997800	Weak transcription	HSMM	muscle
7	chr6:165989000-165997000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:165989000-165997400	Weak transcription	Left Ventricle	heart
9	chr6:165989200-165997200	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr6:165990400-165997200	Weak transcription	Fetal Kidney	kidney
11	chr6:165990600-165996800	Weak transcription	A549	lung
12	chr6:165990800-165994800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:165992200-165997600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:165993200-165997000	Enhancers	Brain Substantia Nigra	brain
15	chr6:165993400-165994800	Weak transcription	Brain Anterior Caudate	brain
16	chr6:165993400-165997200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:165993400-165997400	Weak transcription	Right Ventricle	heart
18	chr6:165994000-165998000	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr6:165994200-165995600	Enhancers	Brain Hippocampus Middle	brain
20	chr6:165994400-165997400	Weak transcription	Hela-S3	cervix

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