Variant report

Variant	rs16898030
Chromosome Location	chr8:124147579-124147580
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:124146952..124149281-chr8:124151497..124153020,2	MCF-7	breast:
2	chr8:124144944..124147685-chr8:124154381..124156517,2	K562	blood:
3	chr8:124131028..124133597-chr8:124144935..124147901,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs34016670	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032827	chr8:123668081-124270400	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv529364	chr8:123763846-124373809	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
3	nsv429939	chr8:124027819-124180819	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv1028933	chr8:124065484-124181718	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv1015490	chr8:124103255-124150990	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1015249	chr8:124103504-124373949	Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
7	nsv539741	chr8:124103504-124373949	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124086000-124154600	Weak transcription	Aorta	Aorta
2	chr8:124086000-124158400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:124086000-124168800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr8:124086000-124169000	Weak transcription	Colon Smooth Muscle	Colon
5	chr8:124086200-124168800	Weak transcription	Esophagus	oesophagus
6	chr8:124086600-124168800	Weak transcription	Lung	lung
7	chr8:124096200-124168800	Weak transcription	Liver	Liver
8	chr8:124097400-124166800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr8:124098400-124166600	Weak transcription	Gastric	stomach
10	chr8:124099000-124166800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr8:124100000-124149800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr8:124107400-124166800	Weak transcription	Pancreas	Pancrea
13	chr8:124109000-124169000	Weak transcription	Fetal Heart	heart
14	chr8:124111400-124151800	Weak transcription	Fetal Muscle Trunk	muscle
15	chr8:124111400-124168800	Weak transcription	Brain Germinal Matrix	brain
16	chr8:124112000-124148400	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr8:124112200-124168800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr8:124112400-124149000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr8:124112600-124168800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr8:124112800-124155400	Weak transcription	Brain Hippocampus Middle	brain
21	chr8:124113600-124169000	Weak transcription	Hela-S3	cervix
22	chr8:124114200-124149000	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr8:124114400-124168800	Weak transcription	Brain Angular Gyrus	brain
24	chr8:124114400-124168800	Weak transcription	Fetal Brain Female	brain
25	chr8:124114600-124152600	Weak transcription	Psoas Muscle	Psoas
26	chr8:124115400-124149600	Weak transcription	HMEC	breast
27	chr8:124116200-124156600	Weak transcription	NHEK	skin
28	chr8:124116400-124168800	Weak transcription	Ovary	ovary
29	chr8:124118600-124149400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr8:124127200-124168800	Weak transcription	Brain Substantia Nigra	brain
31	chr8:124128600-124157000	Weak transcription	Brain Cingulate Gyrus	brain
32	chr8:124129000-124168800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr8:124129000-124169000	Weak transcription	Small Intestine	intestine
34	chr8:124132400-124151800	Weak transcription	HSMMtube	muscle
35	chr8:124132800-124153200	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr8:124132800-124168800	Weak transcription	Rectal Smooth Muscle	rectum
37	chr8:124133800-124161000	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr8:124134000-124160800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr8:124134200-124168800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr8:124135600-124152000	Weak transcription	Placenta	Placenta
41	chr8:124137400-124149000	Weak transcription	Fetal Lung	lung
42	chr8:124137600-124164800	Strong transcription	HUES64 Cell Line	embryonic stem cell
43	chr8:124137600-124164800	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr8:124137800-124168800	Weak transcription	Colonic Mucosa	Colon
45	chr8:124138200-124152200	Strong transcription	HUES48 Cell Line	embryonic stem cell
46	chr8:124138200-124160000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
47	chr8:124138400-124154200	Weak transcription	NHLF	lung
48	chr8:124138400-124160000	Strong transcription	Primary monocytes fromperipheralblood	blood
49	chr8:124138600-124150000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr8:124138600-124159400	Strong transcription	HUES6 Cell Line	embryonic stem cell

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