Variant report

Variant	rs16898198
Chromosome Location	chr8:124268364-124268365
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr8:124268298-124268589	SH-SY5Y	brain:	n/a	chr8:124268532-124268539 chr8:124268532-124268539 chr8:124268525-124268546 chr8:124268527-124268543 chr8:124268359-124268368 chr8:124268532-124268539

No.	Distal block	Cell Line	Cell type
1	chr8:124261531..124264252-chr8:124265815..124269040,3	K562	blood:
2	chr8:124266243..124268937-chr8:124285205..124288009,2	K562	blood:
3	chr8:124251897..124253533-chr8:124265966..124268615,2	MCF-7	breast:
4	chr8:124267584..124270304-chr8:124278882..124282056,4	K562	blood:
5	chr8:124256002..124258845-chr8:124267002..124269680,2	MCF-7	breast:
6	chr8:124267635..124269283-chr8:124269624..124271494,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZHX1-1	chr8:124268160-124268411	NONHSAT128534

Variant related genes	Relation type
ZHX1	TF binding region
ENSG00000189376	Chromatin interaction
ENSG00000165156	Chromatin interaction
ENSG00000238422	Chromatin interaction
ENSG00000259305	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16898147	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16898160	0.85[AMR][1000 genomes]
rs16898192	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032827	chr8:123668081-124270400	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv529364	chr8:123763846-124373809	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
3	nsv1015249	chr8:124103504-124373949	Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv539741	chr8:124103504-124373949	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124253600-124284200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr8:124253800-124269800	Weak transcription	Spleen	Spleen
3	chr8:124253800-124275400	Weak transcription	Colonic Mucosa	Colon
4	chr8:124254000-124269400	Weak transcription	Ovary	ovary
5	chr8:124254000-124270000	Weak transcription	Small Intestine	intestine
6	chr8:124254000-124284000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr8:124254000-124284000	Weak transcription	HSMMtube	muscle
8	chr8:124256400-124269600	Weak transcription	Fetal Intestine Small	intestine
9	chr8:124257800-124269600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr8:124259000-124269200	Weak transcription	Fetal Heart	heart
11	chr8:124262800-124270400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr8:124263200-124272400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr8:124263600-124275400	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr8:124263800-124273600	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr8:124263800-124274800	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr8:124264000-124269000	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr8:124264000-124270000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr8:124264200-124270800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr8:124264200-124274800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr8:124265000-124271800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr8:124265200-124269800	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr8:124265200-124270800	Strong transcription	Fetal Muscle Leg	muscle
23	chr8:124265200-124272200	Strong transcription	K562	blood
24	chr8:124265400-124269600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr8:124265600-124268400	Strong transcription	Skeletal Muscle Female	skeletal muscle
26	chr8:124265600-124268600	Strong transcription	Hela-S3	cervix
27	chr8:124265600-124270400	Strong transcription	Rectal Mucosa Donor 31	rectum
28	chr8:124265600-124270600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr8:124265600-124270600	Strong transcription	Brain Germinal Matrix	brain
30	chr8:124265600-124270600	Strong transcription	Monocytes-CD14+_RO01746	blood
31	chr8:124265600-124270800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr8:124265600-124271000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr8:124265600-124271000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr8:124265800-124268400	Strong transcription	Primary T cells from cord blood	blood
35	chr8:124265800-124268600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr8:124265800-124268600	Strong transcription	Right Ventricle	heart
37	chr8:124265800-124270400	Strong transcription	Placenta	Placenta
38	chr8:124265800-124270600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr8:124265800-124270600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr8:124265800-124270600	Strong transcription	Fetal Stomach	stomach
41	chr8:124265800-124270600	Strong transcription	HSMM	muscle
42	chr8:124265800-124270800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr8:124265800-124270800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr8:124265800-124270800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr8:124265800-124270800	Strong transcription	Fetal Thymus	thymus
46	chr8:124265800-124270800	Strong transcription	Rectal Mucosa Donor 29	rectum
47	chr8:124265800-124271000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr8:124266000-124268400	Strong transcription	Primary T cells fromperipheralblood	blood
49	chr8:124266000-124268600	Strong transcription	Primary B cells from cord blood	blood
50	chr8:124266000-124268600	Strong transcription	Liver	Liver

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