Variant report

Variant	rs16898261
Chromosome Location	chr8:124389608-124389609
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:124385450..124387905-chr8:124388662..124391653,2	MCF-7	breast:
2	chr8:124387035..124391510-chr8:124401759..124405687,5	MCF-7	breast:
3	chr8:124387844..124390569-chr8:124392341..124394788,2	MCF-7	breast:
4	chr8:124387371..124390327-chr8:124407616..124409459,2	MCF-7	breast:
5	chr8:124387429..124390412-chr8:124428005..124430461,2	MCF-7	breast:
6	chr8:124388640..124392535-chr8:124394985..124398200,4	K562	blood:
7	chr8:124385275..124388266-chr8:124388466..124390853,2	K562	blood:
8	chr8:124387879..124390148-chr8:124391664..124394533,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000156795	Chromatin interaction
ENSG00000156802	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11992098	1.00[MKK][hapmap]
rs11996182	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs16898144	1.00[YRI][hapmap]
rs16898172	1.00[YRI][hapmap]
rs1869248	0.82[YRI][hapmap]
rs5001348	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831449	chr8:124276685-124471740	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124329800-124394200	Strong transcription	Dnd41	blood
2	chr8:124330400-124393400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr8:124330400-124394600	Strong transcription	Fetal Thymus	thymus
4	chr8:124330600-124393000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
5	chr8:124335200-124398600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr8:124335600-124398600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr8:124341600-124406800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr8:124345600-124396400	Weak transcription	Psoas Muscle	Psoas
9	chr8:124348600-124398400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr8:124349400-124398200	Weak transcription	Aorta	Aorta
11	chr8:124350200-124393400	Weak transcription	Small Intestine	intestine
12	chr8:124350200-124396400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr8:124367000-124391800	Strong transcription	HUES6 Cell Line	embryonic stem cell
14	chr8:124367200-124390000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr8:124368000-124393400	Weak transcription	Stomach Mucosa	stomach
16	chr8:124373400-124399600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr8:124373400-124399600	Weak transcription	Brain Angular Gyrus	brain
18	chr8:124373600-124395000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr8:124374000-124406800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr8:124374200-124392400	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr8:124374400-124407000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr8:124375800-124391200	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr8:124376800-124392800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr8:124378600-124390000	Strong transcription	GM12878-XiMat	blood
25	chr8:124379000-124407200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr8:124379200-124397600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr8:124380000-124396600	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr8:124380000-124405600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr8:124380800-124390600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr8:124382400-124396200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr8:124384600-124392800	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr8:124384600-124396400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr8:124384600-124396600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr8:124384600-124396600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr8:124384600-124398600	Weak transcription	NH-A	brain
36	chr8:124384800-124389800	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr8:124384800-124390000	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr8:124384800-124393200	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr8:124384800-124393800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr8:124384800-124396400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr8:124384800-124396600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr8:124384800-124398600	Weak transcription	Ovary	ovary
43	chr8:124385000-124391400	Weak transcription	Primary T cells from cord blood	blood
44	chr8:124385000-124392200	Strong transcription	HUES64 Cell Line	embryonic stem cell
45	chr8:124385000-124396600	Weak transcription	NHDF-Ad	bronchial
46	chr8:124385000-124398200	Weak transcription	Fetal Kidney	kidney
47	chr8:124385000-124398400	Weak transcription	Primary B cells from cord blood	blood
48	chr8:124385200-124389800	Weak transcription	HUVEC	blood vessel
49	chr8:124385200-124391800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr8:124385200-124392800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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