Variant report

Variant	rs16898363
Chromosome Location	chr8:124479743-124479744
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:124473789..124476766-chr8:124479348..124481867,2	K562	blood:
2	chr8:124477469..124480247-chr8:124481376..124485041,3	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16898375	0.93[YRI][hapmap];1.00[AMR][1000 genomes]
rs16898383	1.00[AMR][1000 genomes]
rs73705925	1.00[AMR][1000 genomes]
rs73705927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73705930	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831450	chr8:124471741-124661359	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124430200-124484600	Weak transcription	Psoas Muscle	Psoas
2	chr8:124449600-124490800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr8:124451400-124489400	Weak transcription	Spleen	Spleen
4	chr8:124454000-124489400	Weak transcription	Gastric	stomach
5	chr8:124454600-124489000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr8:124454600-124489200	Weak transcription	Brain Hippocampus Middle	brain
7	chr8:124461200-124490200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr8:124461400-124482200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr8:124461600-124486400	Weak transcription	A549	lung
10	chr8:124464400-124483400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr8:124465600-124488800	Weak transcription	Primary T cells from cord blood	blood
12	chr8:124468800-124481000	Weak transcription	NHEK	skin
13	chr8:124469000-124488800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr8:124469200-124488000	Weak transcription	Dnd41	blood
15	chr8:124473600-124480600	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr8:124473600-124481400	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr8:124474200-124483600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr8:124474200-124489000	Weak transcription	Primary hematopoietic stem cells	blood
19	chr8:124475000-124480400	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr8:124475200-124489400	Weak transcription	Fetal Intestine Small	intestine
21	chr8:124475400-124481000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr8:124476800-124480000	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr8:124476800-124489200	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr8:124477400-124481600	Enhancers	HUVEC	blood vessel
25	chr8:124477600-124480000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr8:124478000-124480000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr8:124478200-124479800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr8:124478200-124479800	Enhancers	NH-A	brain
29	chr8:124478200-124480000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr8:124478400-124480000	Enhancers	Muscle Satellite Cultured Cells	--
31	chr8:124478400-124480200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr8:124478600-124489400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr8:124478600-124489400	Weak transcription	Left Ventricle	heart
34	chr8:124478800-124479800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr8:124478800-124480600	Weak transcription	Lung	lung
36	chr8:124478800-124481000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr8:124478800-124484000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr8:124478800-124489600	Weak transcription	Ovary	ovary
39	chr8:124479000-124479800	Enhancers	Osteobl	bone
40	chr8:124479000-124483400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr8:124479000-124483800	Weak transcription	HSMMtube	muscle
42	chr8:124479000-124498400	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr8:124479200-124480400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr8:124479200-124489000	Weak transcription	Fetal Lung	lung
45	chr8:124479600-124481000	Weak transcription	HMEC	breast
46	chr8:124479600-124484000	Weak transcription	NHDF-Ad	bronchial
47	chr8:124479600-124484200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr8:124479600-124484400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr8:124479600-124484600	Weak transcription	HSMM	muscle
50	chr8:124479600-124484600	Weak transcription	NHLF	lung

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