Variant report

Variant	rs16898571
Chromosome Location	chr8:124578381-124578382
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:124576156..124578603-chr8:124779718..124782286,3	MCF-7	breast:
2	chr8:124551947..124555089-chr8:124574852..124578718,4	MCF-7	breast:
3	chr8:124577870..124580782-chr8:124600862..124603238,2	K562	blood:
4	chr8:124575271..124580118-chr8:124587417..124591995,7	MCF-7	breast:
5	chr8:124574833..124579835-chr8:124581420..124586695,7	MCF-7	breast:
6	chr8:124576148..124579059-chr8:124591482..124593021,2	MCF-7	breast:
7	chr8:124578047..124580676-chr8:124642644..124645333,2	MCF-7	breast:
8	chr8:124548751..124555755-chr8:124572914..124580106,12	MCF-7	breast:
9	chr8:124576937..124580419-chr8:124593963..124597370,3	MCF-7	breast:
10	chr8:124575939..124579271-chr8:124581722..124584580,4	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13256524	0.84[AFR][1000 genomes]
rs13264867	0.84[AFR][1000 genomes]
rs13266630	0.84[AFR][1000 genomes]
rs2385269	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2385448	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4388446	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61510724	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6990663	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831450	chr8:124471741-124661359	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124575600-124598600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:124576200-124578400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr8:124577000-124579600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:124578000-124580800	Weak transcription	Fetal Heart	heart
5	chr8:124578200-124580600	Weak transcription	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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