Variant report

Variant	rs16898705
Chromosome Location	chr4:22608759-22608760
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16898716	0.96[ASN][1000 genomes]
rs1963526	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4697326	0.86[ASN][1000 genomes]
rs4697328	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4697329	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4697330	0.86[ASN][1000 genomes]
rs4697331	0.94[ASN][1000 genomes]
rs59691702	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60103565	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73123517	0.81[ASN][1000 genomes]
rs7694334	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349061	chr4:22379581-22887563	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv821634	chr4:22427074-22865948	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1007053	chr4:22573534-22658117	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv967733	chr4:22595783-22611675	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22607000-22609600	Enhancers	Fetal Heart	heart
2	chr4:22608000-22609000	Enhancers	Liver	Liver
3	chr4:22608000-22610200	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr4:22608200-22609200	Enhancers	Primary T cells fromperipheralblood	blood
5	chr4:22608200-22609800	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr4:22608200-22610400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr4:22608200-22610400	Enhancers	Dnd41	blood
8	chr4:22608200-22611600	Enhancers	Fetal Thymus	thymus
9	chr4:22608200-22612000	Enhancers	Primary T cells from cord blood	blood
10	chr4:22608200-22612200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr4:22608400-22609200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr4:22608400-22609400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr4:22608600-22609600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr4:22608600-22611400	Enhancers	Primary T helper naive cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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