Variant report

Variant	rs16898807
Chromosome Location	chr8:124740711-124740712
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KLHL38-1	chr8:124739909-124740751	NONHSAT128564
2	lnc-KLHL38-1	chr8:124740510-124740922	NONHSAT128565

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11989549	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16898809	0.82[ASW][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16898813	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2116353	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs56247604	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831451	chr8:124710946-124885148	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124732600-124740800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr8:124732600-124741000	Weak transcription	Fetal Brain Male	brain
3	chr8:124732800-124745600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr8:124734800-124745600	Genic enhancers	Fetal Intestine Large	intestine
5	chr8:124735400-124745800	Weak transcription	Duodenum Mucosa	Duodenum
6	chr8:124736800-124747600	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr8:124736800-124748000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr8:124737600-124741000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr8:124738600-124745200	Genic enhancers	Fetal Intestine Small	intestine
10	chr8:124739400-124741800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr8:124739600-124741800	Enhancers	Placenta Amnion	Placenta Amnion
12	chr8:124739800-124740800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr8:124739800-124741000	Enhancers	HMEC	breast
14	chr8:124739800-124741400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr8:124740000-124741800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr8:124740200-124741600	Weak transcription	Brain Anterior Caudate	brain
17	chr8:124740200-124741800	Enhancers	NHEK	skin
18	chr8:124740400-124741400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr8:124740400-124741400	Weak transcription	Brain Hippocampus Middle	brain
20	chr8:124740600-124742000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr8:124740600-124744200	Weak transcription	Fetal Heart	heart
22	chr8:124740600-124744600	Weak transcription	HepG2	liver

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