Variant report

Variant	rs16898847
Chromosome Location	chr8:124775052-124775053
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11989560	1.00[AMR][1000 genomes]
rs16898866	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831451	chr8:124710946-124885148	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv6373	chr8:124741567-124786609	Active TSS Genic enhancers Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124762200-124775600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:124767400-124775600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr8:124767800-124778400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr8:124770200-124775800	Enhancers	Fetal Intestine Large	intestine
5	chr8:124770200-124776200	Enhancers	Fetal Intestine Small	intestine
6	chr8:124770600-124780000	Weak transcription	Pancreas	Pancrea
7	chr8:124770800-124775400	Weak transcription	Liver	Liver
8	chr8:124772600-124775200	Enhancers	Fetal Heart	heart
9	chr8:124773000-124775600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr8:124773200-124776000	Enhancers	HepG2	liver
11	chr8:124773400-124775200	Weak transcription	NHEK	skin
12	chr8:124773400-124775400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr8:124773600-124775400	Weak transcription	Osteobl	bone
14	chr8:124773600-124778200	Weak transcription	K562	blood
15	chr8:124774000-124775600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr8:124774200-124776200	Enhancers	Colon Smooth Muscle	Colon
17	chr8:124774800-124775200	Weak transcription	Small Intestine	intestine
18	chr8:124774800-124776000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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