Variant report

Variant	rs16898914
Chromosome Location	chr6:166835821-166835822
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:166755841..166757468-chr6:166833697..166836017,2	MCF-7	breast:
2	chr6:166829729..166831737-chr6:166835222..166837361,2	K562	blood:

Variant related genes	Relation type
ENSG00000198818	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1012896	1.00[AMR][1000 genomes]
rs56679124	1.00[AMR][1000 genomes]
rs61260444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73269268	0.89[AFR][1000 genomes]
rs9459666	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9459667	1.00[AMR][1000 genomes]
rs9459668	1.00[AMR][1000 genomes]
rs9459670	1.00[AMR][1000 genomes]
rs9459671	1.00[AMR][1000 genomes]
rs9459672	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886937	chr6:166830696-166922813	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166808200-166911800	Weak transcription	Psoas Muscle	Psoas
2	chr6:166814400-166837200	Weak transcription	Fetal Heart	heart
3	chr6:166821800-166838600	Strong transcription	Muscle Satellite Cultured Cells	--
4	chr6:166822000-166837200	Strong transcription	Fetal Stomach	stomach
5	chr6:166822000-166838200	Strong transcription	Cortex derived primary cultured neurospheres	brain
6	chr6:166822200-166836000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr6:166822200-166837200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:166822200-166838600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:166822400-166838400	Strong transcription	Skeletal Muscle Male	skeletal muscle
10	chr6:166822400-166838600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:166822400-166838600	Strong transcription	Primary neutrophils fromperipheralblood	blood
12	chr6:166822800-166836200	Weak transcription	Ovary	ovary
13	chr6:166823600-166838000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr6:166823800-166836600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:166824000-166901400	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr6:166824400-166836800	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr6:166824600-166844800	Weak transcription	Colon Smooth Muscle	Colon
18	chr6:166825000-166837600	Strong transcription	Adipose Nuclei	Adipose
19	chr6:166825000-166849200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr6:166825200-166853000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr6:166825200-166875800	Weak transcription	Colonic Mucosa	Colon
22	chr6:166826400-166837600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:166826600-166848800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr6:166827000-166873400	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr6:166827600-166836200	Enhancers	Fetal Thymus	thymus
26	chr6:166827600-166867200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr6:166828200-166838400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr6:166828400-166836000	Enhancers	Dnd41	blood
29	chr6:166829000-166837200	Strong transcription	Brain Anterior Caudate	brain
30	chr6:166829000-166838000	Strong transcription	Stomach Smooth Muscle	stomach
31	chr6:166829200-166838600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr6:166829800-166836000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
33	chr6:166829800-166836000	Weak transcription	Fetal Lung	lung
34	chr6:166829800-166838600	Strong transcription	Lung	lung
35	chr6:166829800-166843800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr6:166829800-166845200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr6:166829800-166845600	Weak transcription	HSMMtube	muscle
38	chr6:166829800-166847600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr6:166829800-166851800	Weak transcription	Fetal Brain Male	brain
40	chr6:166830000-166838400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr6:166830000-166845400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr6:166830000-166866600	Weak transcription	Fetal Intestine Large	intestine
43	chr6:166830200-166837000	Strong transcription	Fetal Muscle Leg	muscle
44	chr6:166830200-166838400	Strong transcription	Gastric	stomach
45	chr6:166830400-166838200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr6:166830400-166838200	Strong transcription	Spleen	Spleen
47	chr6:166830800-166838600	Strong transcription	Left Ventricle	heart
48	chr6:166831800-166838600	Strong transcription	Right Ventricle	heart
49	chr6:166832000-166836800	Strong transcription	Fetal Muscle Trunk	muscle
50	chr6:166833200-166864400	Weak transcription	Fetal Kidney	kidney

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