Variant report

Variant	rs168998
Chromosome Location	chrX:79278220-79278221
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chrX:79277800-79278267	H1-hESC	embryonic stem cell:	n/a	n/a
2	POLR2A	chrX:79277645-79278512	H1-hESC	embryonic stem cell:	n/a	n/a
3	RAD21	chrX:79277893-79278345	H1-hESC	embryonic stem cell:	n/a	chrX:79278203-79278217 chrX:79278207-79278220
4	POLR2A	chrX:79277691-79278631	H1-hESC	embryonic stem cell:	n/a	n/a
5	TBP	chrX:79277716-79278297	H1-hESC	embryonic stem cell:	n/a	n/a
6	SIN3A	chrX:79278059-79278285	H1-hESC	embryonic stem cell:	n/a	n/a
7	JUND	chrX:79278214-79278335	H1-hESC	embryonic stem cell:	n/a	n/a
8	CHD2	chrX:79277981-79278367	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
TBX22	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs195294	0.84[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3370157	chrX:78921830-79315481	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv918040	chrX:78945886-79393258	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	esv3412365	chrX:79161145-79406542	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:79277000-79278400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
2	chrX:79277000-79278800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
3	chrX:79277000-79278800	Bivalent/Poised TSS	Fetal Kidney	kidney
4	chrX:79277200-79278400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chrX:79277200-79278400	Bivalent/Poised TSS	Fetal Brain Female	brain
6	chrX:79277200-79278800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
7	chrX:79277400-79278400	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast
8	chrX:79277400-79278600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
9	chrX:79277600-79278400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chrX:79277600-79278400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chrX:79277600-79278400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
12	chrX:79277600-79278400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
13	chrX:79277600-79278400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
14	chrX:79277600-79278400	Active TSS	Brain Germinal Matrix	brain
15	chrX:79277600-79278400	Bivalent/Poised TSS	Fetal Muscle Leg	muscle
16	chrX:79277600-79278400	Bivalent/Poised TSS	Fetal Stomach	stomach
17	chrX:79277600-79278400	Active TSS	Right Atrium	heart
18	chrX:79277600-79278600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chrX:79277600-79278600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chrX:79277600-79278600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chrX:79277600-79278600	Bivalent/Poised TSS	Fetal Intestine Small	intestine
22	chrX:79277600-79278800	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
23	chrX:79277600-79278800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
24	chrX:79277600-79279000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
25	chrX:79277800-79278400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
26	chrX:79278000-79278800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
27	chrX:79278200-79278400	Enhancers	Brain Hippocampus Middle	brain
28	chrX:79278200-79278600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
29	chrX:79278200-79278600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
30	chrX:79278200-79278800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell

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