Variant report

Variant	rs16899935
Chromosome Location	chr8:125672013-125672014
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:125671685..125674663-chr8:125683736..125685843,2	MCF-7	breast:
2	chr8:125671210..125673860-chr8:125677995..125679854,2	K562	blood:
3	chr8:125647615..125650010-chr8:125670144..125672819,2	MCF-7	breast:
4	chr8:125663706..125665321-chr8:125671326..125673228,2	K562	blood:
5	chr8:125671389..125674362-chr8:125674838..125677120,3	K562	blood:
6	chr8:125663736..125665496-chr8:125671253..125674701,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170873	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10086001	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12545201	1.00[CEU][hapmap];0.81[CHB][hapmap];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12545265	1.00[CEU][hapmap];0.81[CHB][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12545287	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12547626	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16899898	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027585	chr8:125627924-125707738	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
2	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
3	nsv1016502	chr8:125657664-125845074	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125655000-125672200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr8:125662000-125678400	Weak transcription	Fetal Brain Female	brain
3	chr8:125663800-125672200	Weak transcription	Fetal Stomach	stomach
4	chr8:125664200-125672200	Weak transcription	HSMMtube	muscle
5	chr8:125666200-125674200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr8:125667200-125674400	Enhancers	HepG2	liver
7	chr8:125667600-125672800	Weak transcription	Small Intestine	intestine
8	chr8:125667800-125672200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr8:125667800-125672600	Weak transcription	Gastric	stomach
10	chr8:125667800-125672600	Weak transcription	Pancreas	Pancrea
11	chr8:125668200-125672200	Weak transcription	Esophagus	oesophagus
12	chr8:125668200-125672400	Weak transcription	Right Ventricle	heart
13	chr8:125668600-125672200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr8:125668600-125672200	Weak transcription	Fetal Intestine Large	intestine
15	chr8:125668600-125674800	Weak transcription	Liver	Liver
16	chr8:125669400-125673400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr8:125670000-125672200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr8:125670200-125672400	Weak transcription	HMEC	breast
19	chr8:125670800-125674000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr8:125671200-125672200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr8:125671200-125672800	Weak transcription	Brain Germinal Matrix	brain
22	chr8:125671600-125672200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr8:125671600-125672200	Enhancers	Primary T cells from cord blood	blood
24	chr8:125671600-125672200	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr8:125671600-125672200	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr8:125671600-125672200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr8:125671600-125672200	Weak transcription	NHLF	lung
28	chr8:125671600-125672400	Enhancers	Primary T helper cells fromperipheralblood	blood
29	chr8:125671600-125672400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr8:125671600-125673800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
31	chr8:125671800-125672200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr8:125671800-125672200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr8:125671800-125672200	Enhancers	Adipose Nuclei	Adipose
34	chr8:125671800-125672200	Enhancers	Brain Anterior Caudate	brain
35	chr8:125671800-125672200	Enhancers	Brain Cingulate Gyrus	brain
36	chr8:125671800-125672200	Enhancers	Brain Inferior Temporal Lobe	brain
37	chr8:125671800-125672200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
38	chr8:125671800-125672200	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr8:125671800-125672400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
40	chr8:125671800-125672400	Enhancers	Brain Substantia Nigra	brain
41	chr8:125671800-125672400	Enhancers	Right Atrium	heart
42	chr8:125671800-125672600	Flanking Active TSS	Primary B cells from cord blood	blood
43	chr8:125671800-125673000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr8:125671800-125673200	Enhancers	Primary hematopoietic stem cells	blood
45	chr8:125671800-125673400	Enhancers	Primary T cells fromperipheralblood	blood
46	chr8:125671800-125673400	Enhancers	Stomach Mucosa	stomach
47	chr8:125671800-125673400	Enhancers	Dnd41	blood
48	chr8:125671800-125673800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
49	chr8:125671800-125674000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
50	chr8:125671800-125674000	Enhancers	Psoas Muscle	Psoas

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