Variant report

Variant	rs16899968
Chromosome Location	chr8:125737308-125737309
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:125734815..125743876-chr8:125864194..125871100,21	MCF-7	breast:
2	chr8:125736316..125742243-chr8:125861977..125870763,24	MCF-7	breast:
3	chr8:125647571..125649356-chr8:125735665..125737482,2	MCF-7	breast:
4	chr8:125605731..125607581-chr8:125735892..125738512,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255080	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12114306	0.83[AMR][1000 genomes]
rs60184954	0.83[AMR][1000 genomes]
rs715003	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1016502	chr8:125657664-125845074	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv612147	chr8:125733120-125751065	Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125724600-125738200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr8:125724800-125737400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr8:125730000-125737600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr8:125730200-125737600	Enhancers	Fetal Heart	heart
5	chr8:125731000-125738200	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr8:125731400-125738200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr8:125731400-125738400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:125733000-125738800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr8:125733200-125738400	Weak transcription	K562	blood
10	chr8:125733800-125738000	Flanking Active TSS	Liver	Liver
11	chr8:125734000-125738000	Enhancers	Brain Anterior Caudate	brain
12	chr8:125734200-125738000	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr8:125734200-125738200	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr8:125734200-125738400	Weak transcription	Esophagus	oesophagus
15	chr8:125734600-125738000	Weak transcription	Placenta	Placenta
16	chr8:125734800-125738200	Enhancers	Brain Hippocampus Middle	brain
17	chr8:125735000-125738400	Weak transcription	Stomach Mucosa	stomach
18	chr8:125735200-125737600	Weak transcription	Fetal Lung	lung
19	chr8:125735600-125737800	Enhancers	Right Atrium	heart
20	chr8:125735800-125737400	Enhancers	Psoas Muscle	Psoas
21	chr8:125735800-125737400	Flanking Active TSS	HepG2	liver
22	chr8:125735800-125738200	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr8:125736000-125737400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr8:125736000-125737400	Enhancers	Left Ventricle	heart
25	chr8:125736000-125737600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr8:125736000-125737600	Enhancers	Pancreas	Pancrea
27	chr8:125736000-125737800	Enhancers	Right Ventricle	heart
28	chr8:125736000-125738400	Enhancers	Fetal Intestine Small	intestine
29	chr8:125736200-125737600	Enhancers	Fetal Kidney	kidney
30	chr8:125736200-125738200	Weak transcription	NHLF	lung
31	chr8:125736400-125737600	Bivalent Enhancer	Fetal Thymus	thymus
32	chr8:125736400-125737600	Enhancers	NHEK	skin
33	chr8:125736400-125738200	Enhancers	Primary B cells from peripheral blood	blood
34	chr8:125736400-125738200	Enhancers	Fetal Intestine Large	intestine
35	chr8:125736600-125737400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
36	chr8:125736600-125737400	Enhancers	Lung	lung
37	chr8:125736600-125737400	Enhancers	Spleen	Spleen
38	chr8:125736800-125737400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr8:125736800-125737400	Enhancers	Sigmoid Colon	Sigmoid Colon
40	chr8:125736800-125737600	Flanking Active TSS	Fetal Brain Female	brain
41	chr8:125736800-125738000	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr8:125736800-125738200	Weak transcription	Fetal Muscle Trunk	muscle
43	chr8:125736800-125738800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr8:125737000-125737400	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr8:125737000-125737400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
46	chr8:125737000-125737400	Flanking Active TSS	Brain Angular Gyrus	brain
47	chr8:125737000-125737600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr8:125737000-125737600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr8:125737000-125737600	Flanking Active TSS	Adipose Nuclei	Adipose
50	chr8:125737000-125737600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle

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