Variant report

Variant	rs16900764
Chromosome Location	chr8:126648806-126648807
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:126648690..126650676-chr8:126653324..126654836,2	K562	blood:
2	chr8:126442421..126446829-chr8:126648342..126652511,5	MCF-7	breast:
3	chr8:126638113..126640763-chr8:126646852..126649161,2	K562	blood:
4	chr8:126441757..126444291-chr8:126648551..126653388,7	MCF-7	breast:
5	chr8:126646289..126648131-chr8:126648372..126651267,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173334	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16900766	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16900767	0.81[CEU][hapmap];0.84[EUR][1000 genomes]
rs16900768	1.00[ASW][hapmap];0.81[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16900769	1.00[ASW][hapmap];0.81[CEU][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.85[TSI][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16900770	0.89[YRI][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4557721	0.88[EUR][1000 genomes]
rs56883151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs59187171	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs59352476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs60074719	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73338657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126628800-126649400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:126639600-126653600	Weak transcription	Pancreas	Pancrea
3	chr8:126640800-126649200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr8:126640800-126649200	Weak transcription	NHEK	skin
5	chr8:126644200-126649200	Weak transcription	Fetal Lung	lung
6	chr8:126646200-126649400	Weak transcription	Adipose Nuclei	Adipose
7	chr8:126646400-126650400	Enhancers	Primary B cells from peripheral blood	blood
8	chr8:126647200-126649600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr8:126647600-126652200	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr8:126647800-126649400	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr8:126648000-126649400	Enhancers	Small Intestine	intestine
12	chr8:126648000-126649800	Flanking Active TSS	GM12878-XiMat	blood
13	chr8:126648000-126650200	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr8:126648000-126651000	Enhancers	Primary B cells from cord blood	blood
15	chr8:126648200-126649000	Enhancers	Colonic Mucosa	Colon
16	chr8:126648200-126649600	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr8:126648200-126649800	Enhancers	Stomach Mucosa	stomach
18	chr8:126648200-126650400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr8:126648200-126651000	Enhancers	Sigmoid Colon	Sigmoid Colon
20	chr8:126648400-126649800	Enhancers	Duodenum Mucosa	Duodenum
21	chr8:126648600-126649400	Enhancers	A549	lung
22	chr8:126648600-126649400	Enhancers	Hela-S3	cervix
23	chr8:126648600-126651400	Enhancers	HepG2	liver
24	chr8:126648600-126651800	Enhancers	Primary neutrophils fromperipheralblood	blood
25	chr8:126648800-126649000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
26	chr8:126648800-126649200	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr8:126648800-126649800	Enhancers	Primary T cells fromperipheralblood	blood
28	chr8:126648800-126649800	Enhancers	Fetal Intestine Large	intestine
29	chr8:126648800-126649800	Enhancers	Rectal Mucosa Donor 29	rectum
30	chr8:126648800-126650000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
31	chr8:126648800-126650200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr8:126648800-126650400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
33	chr8:126648800-126650600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr8:126648800-126650800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr8:126648800-126651200	Enhancers	Lung	lung
36	chr8:126648800-126651400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr8:126648800-126651400	Enhancers	Placenta	Placenta
38	chr8:126648800-126651400	Enhancers	Spleen	Spleen

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