Variant report

Variant	rs16901312
Chromosome Location	chr8:90887803-90887804
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000251136	Chromatin interaction
ENSG00000104312	Chromatin interaction
ENSG00000207359	Chromatin interaction
ENSG00000164823	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10464867	0.93[CHB][hapmap];0.84[CHD][hapmap]
rs10504884	1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap]
rs13312971	0.86[CHB][hapmap];0.84[CHD][hapmap]
rs13312986	0.87[CHB][hapmap];0.84[CHD][hapmap]
rs14448	0.93[MEX][hapmap]
rs16901429	1.00[CHB][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs16901695	1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap]
rs2284133	0.93[MEX][hapmap]
rs6983345	0.86[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933502	chr8:90702392-91049100	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
2	nsv934114	chr8:90720182-90999106	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
3	nsv891182	chr8:90785685-90888786	Flanking Active TSS Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90883200-90889000	Weak transcription	A549	lung
2	chr8:90887600-90888000	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr8:90887600-90889000	Enhancers	Skeletal Muscle Female	skeletal muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links