Variant report

Variant	rs16902679
Chromosome Location	chr5:35992621-35992622
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10057732	0.94[CEU][hapmap];0.95[GIH][hapmap];0.86[TSI][hapmap];0.85[EUR][1000 genomes]
rs11745036	0.90[EUR][1000 genomes]
rs11746242	1.00[ASW][hapmap];0.82[LWK][hapmap];0.83[MKK][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes]
rs1374011	0.94[CEU][hapmap];0.95[GIH][hapmap];0.86[TSI][hapmap];0.85[EUR][1000 genomes]
rs1374014	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs1445894	0.85[EUR][1000 genomes]
rs1600182	0.85[EUR][1000 genomes]
rs2161551	0.94[CEU][hapmap];0.95[GIH][hapmap];0.86[TSI][hapmap];0.85[EUR][1000 genomes]
rs28434403	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6890283	0.86[TSI][hapmap];0.90[EUR][1000 genomes]
rs7711442	0.94[CEU][hapmap];0.82[EUR][1000 genomes]
rs7720615	0.90[EUR][1000 genomes]
rs921023	0.89[EUR][1000 genomes]
rs984273	0.94[CEU][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471011	chr5:35861068-36003217	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv830261	chr5:35863084-36018048	Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1025695	chr5:35902486-36036934	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv3347042	chr5:35965538-36049066	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35991800-35995200	Weak transcription	Duodenum Mucosa	Duodenum
2	chr5:35992200-35994600	Weak transcription	Fetal Intestine Small	intestine
3	chr5:35992600-35994800	Weak transcription	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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