Variant report

Variant	rs16902708
Chromosome Location	chr5:36067575-36067576
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:36065251-36068009	SK-N-MC	brain:	n/a	n/a
2	ZNF143	chr5:36066564-36067580	H1-hESC	embryonic stem cell:	n/a	chr5:36066936-36066946
3	POLR2A	chr5:36066683-36067917	SK-N-MC	brain:	n/a	n/a
4	MXI1	chr5:36066330-36067650	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
UGT3A2	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1287275	1.00[MKK][hapmap];0.88[YRI][hapmap]
rs16902743	1.00[EUR][1000 genomes]
rs16902746	1.00[EUR][1000 genomes]
rs267777	1.00[EUR][1000 genomes]
rs267780	1.00[EUR][1000 genomes]
rs36232788	1.00[EUR][1000 genomes]
rs3870362	1.00[EUR][1000 genomes]
rs604328	0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv32711	chr5:36047797-36146166	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36061400-36071000	Weak transcription	Dnd41	blood
2	chr5:36066200-36067600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr5:36066200-36067600	Enhancers	Fetal Heart	heart
4	chr5:36066400-36067600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
5	chr5:36066400-36067600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr5:36066400-36068000	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr5:36067000-36067600	Bivalent Enhancer	Fetal Intestine Small	intestine
8	chr5:36067000-36067800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr5:36067000-36070600	Weak transcription	Pancreas	Pancrea
10	chr5:36067200-36067600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr5:36067200-36067600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr5:36067200-36067600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
13	chr5:36067200-36067600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr5:36067200-36067600	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
15	chr5:36067200-36067800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
16	chr5:36067200-36067800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
17	chr5:36067200-36067800	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr5:36067200-36067800	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
19	chr5:36067200-36071800	Weak transcription	Spleen	Spleen
20	chr5:36067200-36090000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr5:36067400-36067600	Flanking Active TSS	H9 Cell Line	embryonic stem cell
22	chr5:36067400-36067600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
23	chr5:36067400-36067600	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr5:36067400-36067800	Enhancers	H1 Cell Line	embryonic stem cell
25	chr5:36067400-36067800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr5:36067400-36067800	Enhancers	Fetal Thymus	thymus
27	chr5:36067400-36067800	Enhancers	Thymus	Thymus
28	chr5:36067400-36068000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr5:36067400-36071000	Weak transcription	Liver	Liver

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