Variant report

Variant	rs16903046
Chromosome Location	chr5:36441932-36441933
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36411850..36414736-chr5:36440428..36442973,2	K562	blood:
2	chr5:36438693..36440826-chr5:36441335..36444284,3	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4334910	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517278	chr5:36430755-36445802	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv597816	chr5:36431978-36443160	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv597817	chr5:36433782-36460075	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv597818	chr5:36440940-36460462	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36438600-36443000	Enhancers	Brain Hippocampus Middle	brain
2	chr5:36438800-36442600	Enhancers	Brain Germinal Matrix	brain
3	chr5:36438800-36442600	Enhancers	Hela-S3	cervix
4	chr5:36439000-36442400	Enhancers	Brain Substantia Nigra	brain
5	chr5:36439200-36446600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr5:36439800-36446400	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr5:36440000-36442200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr5:36440000-36444600	Weak transcription	Fetal Muscle Trunk	muscle
9	chr5:36440200-36442400	Weak transcription	Fetal Thymus	thymus
10	chr5:36440200-36444200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:36440200-36444200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr5:36440400-36442200	Enhancers	Brain Cingulate Gyrus	brain
13	chr5:36440600-36445600	Enhancers	Stomach Mucosa	stomach
14	chr5:36440600-36445800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr5:36440800-36442400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr5:36440800-36442600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
17	chr5:36441000-36442000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr5:36441000-36442000	Weak transcription	Fetal Brain Female	brain
19	chr5:36441000-36442400	Enhancers	K562	blood
20	chr5:36441200-36442000	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr5:36441200-36444200	Weak transcription	Fetal Kidney	kidney
22	chr5:36441600-36442200	Enhancers	Brain Angular Gyrus	brain
23	chr5:36441600-36443600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr5:36441600-36446600	Enhancers	Placenta	Placenta
25	chr5:36441800-36442000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr5:36441800-36442000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr5:36441800-36442200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr5:36441800-36442200	Enhancers	Gastric	stomach
29	chr5:36441800-36442600	Enhancers	NHEK	skin
30	chr5:36441800-36442800	Enhancers	Esophagus	oesophagus
31	chr5:36441800-36443000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr5:36441800-36443000	Enhancers	Brain Anterior Caudate	brain
33	chr5:36441800-36443200	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr5:36441800-36445400	Enhancers	HMEC	breast
35	chr5:36441800-36445600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr5:36441800-36446000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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