Variant report

Variant	rs16903322
Chromosome Location	chr5:14239077-14239078
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:14233703..14236263-chr5:14237579..14240063,2	K562	blood:
2	chr5:14238501..14240091-chr5:14263372..14265550,2	K562	blood:
3	chr5:14143133..14145479-chr5:14237806..14241154,4	MCF-7	breast:
4	chr5:14216973..14219606-chr5:14236627..14239606,2	MCF-7	breast:
5	chr5:14238485..14241035-chr5:14265096..14266696,2	MCF-7	breast:
6	chr5:14238457..14240756-chr5:14270238..14271962,2	MCF-7	breast:
7	chr5:14228783..14230881-chr5:14236364..14239220,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000038382	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs16903265	0.85[YRI][hapmap];0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs16903269	0.91[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16903270	0.92[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16903321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16903350	0.87[AFR][1000 genomes]
rs16903376	0.80[AFR][1000 genomes]
rs16903399	0.85[YRI][hapmap]
rs56140232	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59499572	0.87[AFR][1000 genomes]
rs59619763	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61011080	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61509800	0.87[AFR][1000 genomes]
rs61665335	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748679	0.87[AFR][1000 genomes]
rs73748685	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748687	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748688	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73748696	0.82[AFR][1000 genomes]
rs73751311	0.91[AFR][1000 genomes]
rs73751318	0.87[AFR][1000 genomes]
rs73751327	0.87[AFR][1000 genomes]
rs7703674	0.87[AFR][1000 genomes]
rs7705426	0.87[AFR][1000 genomes]
rs7713114	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534466	chr5:13847044-14246208	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	esv1825924	chr5:14147376-14270450	Flanking Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv830209	chr5:14154989-14301758	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv948355	chr5:14160447-14395478	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv4724	chr5:14225543-14243167	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1026914	chr5:14237782-14751588	Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:14221800-14249600	Weak transcription	Colonic Mucosa	Colon
2	chr5:14224000-14239600	Weak transcription	Primary B cells from cord blood	blood
3	chr5:14226400-14249400	Weak transcription	Esophagus	oesophagus
4	chr5:14226600-14246800	Weak transcription	Fetal Intestine Small	intestine
5	chr5:14231400-14239800	Weak transcription	Small Intestine	intestine
6	chr5:14232200-14240600	Weak transcription	Fetal Intestine Large	intestine
7	chr5:14234200-14240000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr5:14234600-14242600	Weak transcription	Lung	lung
9	chr5:14234600-14250200	Weak transcription	Placenta	Placenta
10	chr5:14235600-14240000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr5:14236200-14239200	Enhancers	HUVEC	blood vessel
12	chr5:14236400-14240800	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr5:14236400-14240800	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr5:14236400-14240800	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr5:14236400-14241000	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr5:14236600-14240200	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr5:14236600-14241000	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr5:14236800-14239400	Enhancers	HSMMtube	muscle
19	chr5:14236800-14240200	Enhancers	Fetal Muscle Leg	muscle
20	chr5:14236800-14241000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr5:14236800-14241200	Enhancers	Fetal Brain Male	brain
22	chr5:14237000-14239800	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr5:14237000-14241000	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr5:14237200-14240800	Enhancers	H1 Cell Line	embryonic stem cell
25	chr5:14237200-14240800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr5:14237400-14239600	Enhancers	NHDF-Ad	bronchial
27	chr5:14237400-14239800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr5:14237400-14239800	Enhancers	Right Ventricle	heart
29	chr5:14237400-14240000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr5:14237400-14240000	Enhancers	H9 Cell Line	embryonic stem cell
31	chr5:14237400-14240000	Enhancers	Ovary	ovary
32	chr5:14237400-14240200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr5:14237400-14240200	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr5:14237400-14240600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
35	chr5:14237400-14242200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr5:14237800-14239400	Weak transcription	GM12878-XiMat	blood
37	chr5:14237800-14239600	Weak transcription	Aorta	Aorta
38	chr5:14237800-14239600	Enhancers	NHLF	lung
39	chr5:14237800-14239800	Weak transcription	Fetal Lung	lung
40	chr5:14237800-14241000	Enhancers	Duodenum Smooth Muscle	Duodenum
41	chr5:14237800-14241200	Weak transcription	Brain Angular Gyrus	brain
42	chr5:14237800-14241200	Enhancers	A549	lung
43	chr5:14237800-14242600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr5:14237800-14244000	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr5:14237800-14246600	Weak transcription	Pancreas	Pancrea
46	chr5:14238000-14241000	Enhancers	NH-A	brain
47	chr5:14238000-14241600	Enhancers	Colon Smooth Muscle	Colon
48	chr5:14238000-14250000	Weak transcription	HepG2	liver
49	chr5:14238000-14252400	Weak transcription	NHEK	skin
50	chr5:14238400-14239400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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