Variant report

Variant	rs16903741
Chromosome Location	chr5:14946949-14946950
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:14946629..14947384-chr5:15003311..15004216,3	K562	blood:
2	chr5:14946879..14947508-chr5:15013777..15014301,2	MCF-7	breast:
3	chr5:14946729..14947608-chr5:15003318..15004150,4	MCF-7	breast:
4	chr5:14946624..14947805-chr5:15003290..15004336,15	MCF-7	breast:
5	chr5:14938562..14940130-chr5:14945918..14948261,2	K562	blood:
6	chr5:14727214..14727733-chr5:14946754..14947623,2	MCF-7	breast:
7	chr5:14937263..14940130-chr5:14945612..14948261,3	K562	blood:
8	chr5:14727240..14728065-chr5:14946815..14947417,2	MCF-7	breast:
9	chr5:14871785..14872721-chr5:14946511..14947536,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000272057	Chromatin interaction
ENSG00000154122	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018187	chr5:14385164-15127103	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv830212	chr5:14784197-14966683	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv530221	chr5:14859687-15364470	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	nsv432717	chr5:14887400-15126500	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv1017579	chr5:14888997-15194335	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv597261	chr5:14913369-14962587	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
7	nsv881238	chr5:14917813-14950952	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	nsv881343	chr5:14917813-14956699	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
9	nsv881445	chr5:14917813-14960920	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
10	nsv881333	chr5:14924458-14962587	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
11	nsv461982	chr5:14943456-15044842	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
12	nsv597262	chr5:14943456-15044842	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:14939200-14948400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:14945200-14947000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr5:14945200-14948000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr5:14945600-14947800	Enhancers	HepG2	liver
5	chr5:14946000-14947200	Weak transcription	Osteobl	bone
6	chr5:14946000-14947600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:14946000-14947800	Enhancers	A549	lung
8	chr5:14946000-14948000	Enhancers	Hela-S3	cervix
9	chr5:14946200-14947000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr5:14946200-14947600	Enhancers	Fetal Heart	heart
11	chr5:14946400-14947200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr5:14946400-14947600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr5:14946400-14947800	Enhancers	Right Atrium	heart
14	chr5:14946400-14947800	Enhancers	HMEC	breast
15	chr5:14946600-14947600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr5:14946600-14947600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr5:14946800-14947200	Enhancers	Placenta Amnion	Placenta Amnion
18	chr5:14946800-14947400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr5:14946800-14947400	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr5:14946800-14947400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr5:14946800-14947400	Enhancers	NHEK	skin
22	chr5:14946800-14947600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr5:14946800-14947600	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr5:14946800-14947600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr5:14946800-14947600	Enhancers	Duodenum Mucosa	Duodenum
26	chr5:14946800-14947600	Enhancers	Rectal Mucosa Donor 29	rectum

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