Variant report

Variant	rs16903766
Chromosome Location	chr5:14984833-14984834
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10037304	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10040496	0.99[ASN][1000 genomes]
rs11133800	0.99[ASN][1000 genomes]
rs12186431	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12187073	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1344378	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16903747	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[YRI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1992707	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4701621	0.99[ASN][1000 genomes]
rs4702067	0.96[ASN][1000 genomes]
rs55838605	0.99[ASN][1000 genomes]
rs56083839	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56106940	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62353851	0.99[ASN][1000 genomes]
rs62353853	0.99[ASN][1000 genomes]
rs73750408	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73752229	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7710647	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018187	chr5:14385164-15127103	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv530221	chr5:14859687-15364470	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv432717	chr5:14887400-15126500	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv1017579	chr5:14888997-15194335	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv461982	chr5:14943456-15044842	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv597262	chr5:14943456-15044842	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv470991	chr5:14949696-15022112	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16903766	SARS	cis	Frontal Cortex	GTEx

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:14983000-14985600	Enhancers	Primary hematopoietic stem cells	blood
2	chr5:14983000-14985800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr5:14983400-14985600	Enhancers	Dnd41	blood
4	chr5:14983600-14985600	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr5:14983600-14985800	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr5:14983800-14985600	Enhancers	Primary T cells fromperipheralblood	blood
7	chr5:14983800-14985600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr5:14983800-14985600	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr5:14983800-14985600	Enhancers	Fetal Thymus	thymus
10	chr5:14983800-14985800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr5:14983800-14985800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr5:14984000-14985200	Enhancers	Primary B cells from peripheral blood	blood
13	chr5:14984000-14985200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr5:14984000-14985200	Enhancers	Thymus	Thymus
15	chr5:14984000-14985600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr5:14984000-14985600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr5:14984000-14985600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr5:14984000-14985600	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr5:14984200-14986200	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr5:14984200-14988200	Weak transcription	Duodenum Mucosa	Duodenum
21	chr5:14984400-14985600	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr5:14984400-14985800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr5:14984600-14985600	Enhancers	Primary T cells from cord blood	blood
24	chr5:14984600-14985800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr5:14984600-14988400	Weak transcription	Sigmoid Colon	Sigmoid Colon

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