Variant report

Variant	rs16903953
Chromosome Location	chr8:91156055-91156056
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:91151874..91154123-chr8:91154645..91156445,2	K562	blood:
2	chr4:6564574..6566094-chr8:91155316..91156835,2	K562	blood:
3	chr8:91155035..91157497-chr8:91163156..91166027,2	K562	blood:
4	chr8:91148105..91150746-chr8:91155344..91157015,2	K562	blood:
5	chr3:73160015..73161608-chr8:91155335..91156836,2	K562	blood:
6	chr11:62607647..62609221-chr8:91155335..91156835,2	MCF-7	breast:
7	chr17:41464289..41466075-chr8:91155315..91156816,2	MCF-7	breast:
8	chr11:62607627..62609222-chr8:91155315..91156836,3	K562	blood:
9	chr1:160080964..160082487-chr8:91155315..91156836,2	K562	blood:
10	chr3:73158464..73161607-chr8:91155315..91156835,5	K562	blood:
11	chr17:41463347..41467581-chr8:91153836..91156836,7	K562	blood:
12	chr17:41463347..41467815-chr8:91153835..91156835,9	K562	blood:
13	chr17:41400577..41402205-chr8:91155335..91156836,2	K562	blood:
14	chr17:41464201..41467636-chr8:91155335..91156835,3	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ENSG00000188825	Chromatin interaction
ENSG00000223247	Chromatin interaction
ENSG00000133316	Chromatin interaction
ENSG00000074211	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13312871	1.00[AMR][1000 genomes]
rs13312893	1.00[AMR][1000 genomes]
rs13312907	1.00[AMR][1000 genomes]
rs13312949	1.00[AMR][1000 genomes]
rs13312952	1.00[AMR][1000 genomes]
rs16903623	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16903895	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16904022	1.00[AMR][1000 genomes]
rs16904026	1.00[AMR][1000 genomes]
rs35895306	1.00[AMR][1000 genomes]
rs72563785	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758164	chr8:91000786-91329669	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv2759628	chr8:91000786-91329669	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv2757281	chr8:91090821-91235335	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv34347	chr8:91101339-91179126	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
5	nsv470225	chr8:91113616-91229254	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
6	nsv891184	chr8:91114698-91222654	Active TSS Genic enhancers Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
7	nsv824687	chr8:91144854-91177488	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	esv35109	chr8:91150726-91226940	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
9	nsv818643	chr8:91153308-91212148	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91155400-91156600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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