Variant report

Variant	rs16904099
Chromosome Location	chr8:130519900-130519901
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10505540	0.80[CHD][hapmap]
rs16904087	0.89[ASW][hapmap];0.81[CHB][hapmap]
rs16904093	0.89[ASW][hapmap];0.81[CHB][hapmap]
rs17179377	0.84[CEU][hapmap]
rs2395900	1.00[CEU][hapmap];0.81[CHB][hapmap];0.90[CHD][hapmap];0.86[GIH][hapmap];0.83[JPT][hapmap];0.89[TSI][hapmap]
rs73393985	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130519200-130522400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr8:130519400-130522200	Enhancers	NHEK	skin
3	chr8:130519400-130524000	Strong transcription	K562	blood
4	chr8:130519600-130520600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr8:130519600-130521400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr8:130519600-130521400	Enhancers	HSMM	muscle
7	chr8:130519600-130522200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr8:130519600-130523000	Enhancers	HMEC	breast
9	chr8:130519600-130524400	Weak transcription	Dnd41	blood
10	chr8:130519800-130521000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr8:130519800-130521400	Enhancers	Osteobl	bone

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links