Variant report

Variant	rs16904148
Chromosome Location	chr8:130720876-130720877
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:130719927..130722565-chr8:130723755..130726675,2	MCF-7	breast:
2	chr8:130717351..130718895-chr8:130719468..130721279,2	K562	blood:
3	chr8:130701843..130703503-chr8:130719583..130721644,2	K562	blood:
4	chr8:130700888..130706431-chr8:130718980..130724092,7	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16904150	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58231662	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6985815	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes]
rs7012787	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8387	chr8:130711059-130756654	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130719000-130723200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr8:130719200-130721000	Flanking Active TSS	HUVEC	blood vessel
3	chr8:130719200-130721400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:130719200-130723400	Enhancers	HMEC	breast
5	chr8:130719200-130723600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr8:130719200-130723800	Flanking Active TSS	A549	lung
7	chr8:130719400-130721200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr8:130719600-130723400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr8:130719800-130721600	Enhancers	Fetal Intestine Small	intestine
10	chr8:130719800-130721800	Enhancers	Fetal Heart	heart
11	chr8:130719800-130723600	Enhancers	NHDF-Ad	bronchial
12	chr8:130719800-130725600	Enhancers	K562	blood
13	chr8:130720000-130721000	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr8:130720000-130721000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr8:130720000-130721000	Flanking Active TSS	Hela-S3	cervix
16	chr8:130720000-130721200	Enhancers	Small Intestine	intestine
17	chr8:130720000-130721400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr8:130720000-130721400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
19	chr8:130720000-130721600	Enhancers	Fetal Stomach	stomach
20	chr8:130720000-130721600	Enhancers	HSMMtube	muscle
21	chr8:130720000-130722200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr8:130720000-130722400	Enhancers	Fetal Lung	lung
23	chr8:130720000-130723400	Enhancers	Fetal Intestine Large	intestine
24	chr8:130720000-130723400	Enhancers	HSMM	muscle
25	chr8:130720200-130721000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr8:130720200-130721000	Enhancers	Esophagus	oesophagus
27	chr8:130720200-130721000	Enhancers	Fetal Kidney	kidney
28	chr8:130720200-130721000	Enhancers	Fetal Muscle Trunk	muscle
29	chr8:130720200-130721000	Enhancers	Right Atrium	heart
30	chr8:130720200-130721200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr8:130720200-130721200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr8:130720200-130721200	Enhancers	Fetal Muscle Leg	muscle
33	chr8:130720200-130721400	Enhancers	Placenta	Placenta
34	chr8:130720200-130721600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr8:130720200-130723800	Enhancers	Placenta Amnion	Placenta Amnion
36	chr8:130720400-130721000	Enhancers	Gastric	stomach
37	chr8:130720400-130721000	Enhancers	Lung	lung
38	chr8:130720400-130721400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr8:130720400-130722000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr8:130720400-130722600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr8:130720400-130723600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr8:130720600-130723600	Enhancers	NHEK	skin
43	chr8:130720600-130724800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr8:130720800-130721200	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
45	chr8:130720800-130721200	Enhancers	NHLF	lung
46	chr8:130720800-130722200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr8:130720800-130722400	Enhancers	NH-A	brain
48	chr8:130720800-130723400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr8:130720800-130723600	Enhancers	Osteobl	bone
50	chr8:130720800-130725600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links