Variant report

Variant	rs16904281
Chromosome Location	chr8:131489497-131489498
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16904262	1.00[AMR][1000 genomes]
rs16904271	1.00[AMR][1000 genomes]
rs16904273	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16904275	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16904276	1.00[AMR][1000 genomes]
rs16904277	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16904278	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16904280	1.00[AMR][1000 genomes]
rs6984626	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6988717	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869334	chr8:131025093-131651487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv915580	chr8:131025093-131667578	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv533085	chr8:131042781-131755007	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131486600-131493600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:131488600-131489800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr8:131489000-131490000	Weak transcription	A549	lung
4	chr8:131489200-131490000	Enhancers	Placenta	Placenta
5	chr8:131489200-131490400	Enhancers	HUVEC	blood vessel
6	chr8:131489200-131491200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr8:131489400-131489800	Enhancers	NHLF	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links